View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14711_low_19 (Length: 268)

Name: NF14711_low_19
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14711_low_19
NF14711_low_19
[»] chr1 (8 HSPs)
chr1 (12-252)||(28043589-28043819)
chr1 (41-166)||(49938734-49938863)
chr1 (16-132)||(14576642-14576760)
chr1 (23-132)||(17603372-17603484)
chr1 (117-166)||(489257-489306)
chr1 (101-166)||(29904802-29904867)
chr1 (13-89)||(473124-473199)
chr1 (110-166)||(2295156-2295212)
[»] chr8 (3 HSPs)
chr8 (22-166)||(26771234-26771381)
chr8 (75-166)||(36963308-36963402)
chr8 (22-166)||(12976182-12976328)
[»] chr5 (3 HSPs)
chr5 (99-167)||(29815048-29815116)
chr5 (89-166)||(32862630-32862707)
chr5 (89-166)||(42500197-42500273)
[»] chr4 (2 HSPs)
chr4 (117-201)||(13126495-13126579)
chr4 (16-166)||(22030166-22030319)
[»] chr7 (4 HSPs)
chr7 (12-82)||(33266526-33266595)
chr7 (101-142)||(8960617-8960658)
chr7 (106-166)||(4970746-4970806)
chr7 (41-89)||(4970828-4970876)
[»] chr3 (2 HSPs)
chr3 (117-166)||(5436139-5436188)
chr3 (118-166)||(37795663-37795711)
[»] chr2 (2 HSPs)
chr2 (125-166)||(21828037-21828078)
chr2 (117-201)||(4606992-4607076)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 28043589 - 28043819
Alignment:
Q  12 tagcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaacttaaaataacttggaaaagtttttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  28043589 tagcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaacttaaaa----------aagtttttg 28043678  T
Q  112 aaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttataatggtaggtaaacttgaataagataatccaaacataccttagta 211  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||    
T  28043679 aaaattgtcgtaagttgtttttagaagtttttctaaacagtcttataaaacttataatggtagataaactcgaataagttaatccaaacagaccttagta 28043778  T
Q  212 taatactaggttttttgttacattatgtttatgttagatta 252  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  28043779 taatactaggttttttgttacgttatgtttatgttagatta 28043819  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 49938734 - 49938863
Alignment:
Q  41 ttttcgtatatgctaaaagttctttttaaaagccatattagagaactta---aaataacttggaaaa-gtttttgaaaattgtcgtaagttgtttttaga 136  Q
    |||| ||||||| || ||||| |||||| |||| |||||||||||||||   |||||| ||| |||| | |||||||||||||| |||| |||||| | |    
T  49938734 tttttgtatatgttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcataagctgttttcata 49938833  T
Q  137 agttcttctaaacagtcttacaaaacttat 166  Q
    |||||| | ||||| ||| |||||||||||    
T  49938834 agttctcccaaacaatctcacaaaacttat 49938863  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 14576760 - 14576642
Alignment:
Q  16 aaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactt--aaaataa-cttggaaaagtttttga 112  Q
    ||||| |||||||||||||| ||| |||| |||||||||| || || |||||| |||| ||||||||||||||  ||||||| ||   ||||| ||||||    
T  14576760 aaaggataaaataaagttaaattgttttt-gtatatgctataatttttttttataagctatattagagaactttgaaaataagctgaaaaaagcttttga 14576662  T
Q  113 aaattgtcgtaagttgtttt 132  Q
    |||||||| |||| ||||||    
T  14576661 aaattgtcataagctgtttt 14576642  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 17603484 - 17603372
Alignment:
Q  23 aaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactt---aaaataacttggaaaa-gtttttgaaaattg 118  Q
    ||||||| ||||| ||| |||| |||||||||| ||||| |||||| |||| ||||| ||||||||   ||||||| ||| |||| |||| |||||||||    
T  17603484 aaaataacgttaaattgttttt-gtatatgctataagttgtttttataagctatattggagaacttctgaaaataagttgtaaaaagtttatgaaaattg 17603386  T
Q  119 tcgtaagttgtttt 132  Q
    || |||| ||||||    
T  17603385 tcataagctgtttt 17603372  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 489257 - 489306
Alignment:
Q  117 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    |||| ||||||||||| | ||||| |||||||||||||||||||| ||||    
T  489257 tgtcataagttgttttcataagtttttctaaacagtcttacaaaaattat 489306  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 29904802 - 29904867
Alignment:
Q  101 aaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    ||||| |||||||||||| | |||| |||||||| |||||||   ||||||||| |||||||||||    
T  29904802 aaaagcttttgaaaattgccataagctgtttttataagttctctcaaacagtctcacaaaacttat 29904867  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 473124 - 473199
Alignment:
Q  13 agcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactta 89  Q
    |||||| |||||||||||||||| ||| ||||||| ||||||| ||||| |||||| |||   |||| |||||||||    
T  473124 agcaaaaggtaaaataaagttaaattg-ttttcgtgtatgctataagttgtttttataagttctattggagaactta 473199  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 2295156 - 2295212
Alignment:
Q  110 tgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    ||||||||||| |||| |||||| | ||||||| | ||||||||| |||||||||||    
T  2295156 tgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttat 2295212  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 26771234 - 26771381
Alignment:
Q  22 taaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactta---aaataacttggaaaagt-ttttgaaaatt 117  Q
    ||||||||| |||| ||| |||| |||||||||| ||| | |||||| |||  |||||||||||||||   |||||| ||| |||||  |||||||||||    
T  26771234 taaaataaacttaaattgttttt-gtatatgctataagctttttttataagatatattagagaacttatgaaaataagttgaaaaaggcttttgaaaatt 26771332  T
Q  118 gtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    ||| |||| |||||| | ||||||| | ||||||||| |||||||||||    
T  26771333 gtcataagctgttttcataagttctcccaaacagtctcacaaaacttat 26771381  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 36963402 - 36963308
Alignment:
Q  75 atattagagaact--taaaataacttggaaaa-gtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    |||||||||||||  |||||||| ||| |||| | ||||||||||||||  ||| |||||||  ||||||| | ||||||||| |||||||||||    
T  36963402 atattagagaactaataaaataagttgtaaaaagcttttgaaaattgtcaaaagctgtttttgtaagttctcccaaacagtctcacaaaacttat 36963308  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 12976182 - 12976328
Alignment:
Q  22 taaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactta--aaataa-cttggaaaagtttttgaaaattg 118  Q
    |||||||||||||| ||  ||||  ||||||||| || || |||||| |||| |||||||||||||||  |||||| ||   ||||| ||||||||||||    
T  12976182 taaaataaagttaaattaattttt-tatatgctacaatttgtttttataagctatattagagaacttatgaaataagctgaaaaaagcttttgaaaattg 12976280  T
Q  119 tcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    |   ||| |||| | | ||||||| ||||||||||| ||||| |||||    
T  12976281 ttagaagctgttctcataagttctactaaacagtctcacaaaccttat 12976328  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 29815116 - 29815048
Alignment:
Q  99 ggaaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttata 167  Q
    ||||||| |||||||||||||  |||||||||||   ||||||||||||| ||||| ||||||||||||    
T  29815116 ggaaaagcttttgaaaattgttataagttgttttcgtaagttcttctaaatagtctcacaaaacttata 29815048  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 32862707 - 32862630
Alignment:
Q  89 aaaataacttggaaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    |||||||  |||||||| || |||||| |||||||||||||||| | || |||||| ||||||| | |||||| ||||    
T  32862707 aaaataagctggaaaagcttatgaaaaatgtcgtaagttgttttcataaattcttccaaacagtgtcacaaaatttat 32862630  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 42500273 - 42500197
Alignment:
Q  89 aaaataacttggaaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    ||||||| ||| ||||| || ||||||||||||||||||||||  | |||||| || ||| ||||| |||||||||||    
T  42500273 aaaataagttgaaaaagcttatgaaaattgtcgtaagttgtttccataagttc-tccaaagagtctcacaaaacttat 42500197  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 13126579 - 13126495
Alignment:
Q  117 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttataatggtaggtaaacttgaataagataatccaaaca 201  Q
    |||| |||| |||||||| ||||||||| ||||||||| |||||||||||  | |||||||| ||  ||||||  ||||||||||    
T  13126579 tgtcataagctgtttttataagttcttccaaacagtctcacaaaacttatgttagtaggtaagctaaaataagccaatccaaaca 13126495  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 22030166 - 22030319
Alignment:
Q  16 aaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactta---aaataacttg-gaaaagtttttg 111  Q
    ||||| |||||||||||||  ||  |||| |||||||||| ||||| || ||| |||  | |||||||||||||   ||||||| || |||||| |||||    
T  22030166 aaaggataaaataaagttatattattttt-gtatatgctataagttgttcttacaagttaaattagagaacttatgaaaataacctgagaaaagcttttg 22030264  T
Q  112 aaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    ||||||||| |||| |||||| | ||||||| | ||| || || |||||||||||    
T  22030265 aaaattgtcataagctgttttcataagttctcccaaataggctcacaaaacttat 22030319  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 33266595 - 33266526
Alignment:
Q  12 tagcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattaga 82  Q
    ||||||||| |||||||||||||| ||||||||| || || ||| |||||||||||| |||| | ||||||    
T  33266595 tagcaaaggataaaataaagttaaattgcttttc-tacatcctataagttctttttataagctacattaga 33266526  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 8960658 - 8960617
Alignment:
Q  101 aaaagtttttgaaaattgtcgtaagttgtttttagaagttct 142  Q
    ||||| |||||||||||||| ||||||||||||| |||||||    
T  8960658 aaaagcttttgaaaattgtcataagttgtttttataagttct 8960617  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 4970806 - 4970746
Alignment:
Q  106 tttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    ||||||||||||| | ||||||||||| | ||||||| | ||||||||| |||| ||||||    
T  4970806 tttttgaaaattgccataagttgttttcataagttctcccaaacagtctcacaagacttat 4970746  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 4970876 - 4970828
Alignment:
Q  41 ttttcgtatatgctaaaagttctttttaaaagccatattagagaactta 89  Q
    |||| |||||||||| |||||||||||| |||  |||||||||||||||    
T  4970876 tttttgtatatgctataagttctttttataagatatattagagaactta 4970828  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 5436139 - 5436188
Alignment:
Q  117 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    |||| ||||||||||| ||||||||||| ||||||| | |||||||||||    
T  5436139 tgtcataagttgttttcagaagttcttcaaaacagtgtcacaaaacttat 5436188  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 37795663 - 37795711
Alignment:
Q  118 gtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    ||||||||||||||| | |||| |||| |||||||||||||| ||||||    
T  37795663 gtcgtaagttgttttaataagtccttccaaacagtcttacaagacttat 37795711  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 21828037 - 21828078
Alignment:
Q  125 gttgtttttagaagttcttctaaacagtcttacaaaacttat 166  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  21828037 gttgttttcaaaagttcttctaaacagtctcacaaaacttat 21828078  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 4606992 - 4607076
Alignment:
Q  117 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttataatggtaggtaaacttgaataagataatccaaaca 201  Q
    |||| ||||||||||| | ||||||| | ||| ||||| |||||||||||| |||||| ||| ||  ||||||  ||||||||||    
T  4606992 tgtcataagttgttttcacaagttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaaca 4607076  T

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