View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14711_low_2 (Length: 543)
Name: NF14711_low_2
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Complemental strand, 9393425 - 9392990
Alignment:
| Q |
19 |
cttgtgacttctattttgatatgaagtacactgtgccatatttaactttctctaatattgacaatggtatgatttcataaattaattatgatgatttgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9393425 |
cttgtgacttctattttgatatgaagtacaatgtgccatatttaactttctctaatattgacaatggtatgatttcataaattaattatgatgatttgct |
9393326 |
T |
|
| Q |
119 |
taagtttcttgcttgtagctttaccgaattttttatgtt-attgtggttttccctgattgatacagcacatgccataatagaaagtgagacttcaacact |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
9393325 |
taagtttcttgcttgtagctttaccgtattttttttgttgattgtggtttgccctgattgatacagcacatgccataatagaaagcgagacttcaacact |
9393226 |
T |
|
| Q |
218 |
ttcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaaagtcaacacaaattaaagaatctaataggcctgagtggacttta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9393225 |
ttcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaaagtcaacacaaattaaagaatctaataggcctgagtggacttta |
9393126 |
T |
|
| Q |
318 |
ctggatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattggtgacattaagcttgtgacggtatttaggctattttgcg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||| ||||||||||| ||| ||||| |
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| T |
9393125 |
ctggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgca |
9393026 |
T |
|
| Q |
418 |
taatgtttctttggttcattgtaacattgcttgtaa |
453 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||| |
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|
| T |
9393025 |
taatgtttctttggttcattttaactttgctggtaa |
9392990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 526
Target Start/End: Complemental strand, 31943055 - 31942543
Alignment:
| Q |
19 |
cttgtgacttctattttgatatgaagtacactgtgccatatttaactttctctaatattgacaatggtatgatttcataaattaattatgatgatttgct |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
31943055 |
cttgtgacttctatttcgatatgaagtacactgtgccatatttaactttctgtaacattgacaatggtatgattttgtaaattaattatgatgatttgct |
31942956 |
T |
|
| Q |
119 |
taagtttcttgcttgtagctttaccgaattttttatgtt-attgtggttttccctgattgatacagcacatgccataatagaaagtgagacttcaacact |
217 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
31942955 |
taagtttcttgcatgtagcttcaccgaattttttatgttgattatggtttgccctgattgatacagcacctgccataatagaaagcaagacttcaacact |
31942856 |
T |
|
| Q |
218 |
ttcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaaagtcaacacaaattaaagaatctaataggcctgagtggacttta |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
31942855 |
ttcaagtgaatctgggtccaatgtccatgcaactgataagaaaggggttaaagaaaaatcaactcaaattaaagaatctaataggcgcgagtggacttta |
31942756 |
T |
|
| Q |
318 |
ctggatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattggtgacattaagcttgtgacggtatttaggctattttgcg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||| ||||||||||| ||| ||||| |
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|
| T |
31942755 |
ctggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgca |
31942656 |
T |
|
| Q |
418 |
taatgtttctttggttcattgtaacattgcttgta-aggannnnnnnactgattttataat----gttgtttttgactttgaagaggtgggctgtggata |
512 |
Q |
| |
|
|||||||||| |||||||| |||| ||||| ||| | | |||||||||||||| |||||||||||| |||||||| ||||||||||||| |
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|
| T |
31942655 |
taatgtttctaaggttcattttaactttgctggtagataatatttttactgattttataatcttggttgtttttgac-ttgaagagatgggctgtggata |
31942557 |
T |
|
| Q |
513 |
caaatgaatatgct |
526 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
31942556 |
taaataaacatgct |
31942543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 13539620 - 13539554
Alignment:
| Q |
306 |
gagtggactttactggatttgtattctgggtgtggagctatgtccactggcctttgttttggagctt |
372 |
Q |
| |
|
||||||| |||| ||||||||||| | || ||||||||||||||||| || |||| |||||||||| |
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|
| T |
13539620 |
gagtggagtttattggatttgtatgccggttgtggagctatgtccacgggacttttctttggagctt |
13539554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 1341255 - 1340751
Alignment:
| Q |
19 |
cttgtgacttctattttgatatgaagtacactgtgccatatttaactttctctaatattgacaatggtatgatttcataaattaattatgatgatttgct |
118 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
1341255 |
cttgtgaattctattttgacatgaagtacactgtgccatatttaacgttctcaaatgttggcaatggtatgatttcataatttaattatgatgatttgtt |
1341156 |
T |
|
| Q |
119 |
taagtttcttgcttgtagctttaccgaa---ttttttatgtt-attgtggttttccctgattgatacagcacatgccataatagaaagtgagacttcaac |
214 |
Q |
| |
|
|||||||||||| |||| |||| | || ||||||||||| |||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||| |
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|
| T |
1341155 |
taagtttcttgcatgtaactttgctaaacttttttttatgttgattgtggtttaccctgattgatacatcacctgccaaaatagaaagtgagacttcaac |
1341056 |
T |
|
| Q |
215 |
actttcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaaagtcaacacaaattaaagaatctaataggcctgagtggact |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| |||||||||| | |||||||||||| |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
1341055 |
actttcaagtgaatctgggtacaatgtccatgcagctgataaaaatgcggttaaagaaaaatcaagtcaaattaaagaatgtaataggcctgagtggact |
1340956 |
T |
|
| Q |
315 |
ttactggatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattggtgacattaagcttgtgacggtatttaggctatttt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||| ||||||||||| ||| ||| |
|
|
| T |
1340955 |
ttactggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcatctatttctggcattaagcttgtcacggtatttagactaattt |
1340856 |
T |
|
| Q |
415 |
gcgtaatgtttctttggttcattgtaacattgcttgta-aggannnnnnnactgattttataatgttgtttttgactttgaagaggtgggctgtggatac |
513 |
Q |
| |
|
|| |||||||||||||||||||| |||| ||||||||| || | ||| |||||||||||||||||||||| || ||||| ||||| ||||||| |
|
|
| T |
1340855 |
gcataatgtttctttggttcattttaactttgcttgtacagaatatctttactaattttataatgttgtttttgac-ttcaagagatgggccgtggatat |
1340757 |
T |
|
| Q |
514 |
aaatga |
519 |
Q |
| |
|
|||||| |
|
|
| T |
1340756 |
aaatga |
1340751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 525
Target Start/End: Complemental strand, 5643309 - 5642794
Alignment:
| Q |
30 |
tattttgatatgaagtacactgtgccatatttaactttctctaatattgacaatggtatgatttcataaattaattatgatgatttgcttaagtttcttg |
129 |
Q |
| |
|
|||| ||||||||| |||||| |||||||| ||||||| || | |||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
5643309 |
tattatgatatgaaatacactttgccatatctaactttttcaagcattgacaatggtatgatttcataatttaattatgatgatttctttaagtttcttc |
5643210 |
T |
|
| Q |
130 |
cttgtagctttaccgaa-ttttttatg-ttattgtggttttccctgattgatacagcacatgccataatagaa---------------------agtgag |
206 |
Q |
| |
|
|||| |||||| ||| ||||||||| ||||||||||||||| |||||||| ||| || | | | ||||||| |||||| |
|
|
| T |
5643209 |
tatgtaactttactgaatttttttatgtttattgtggttttccttgattgattcagaaccttcaaaaatagaaagcgagactgacaaaatagaaagtgag |
5643110 |
T |
|
| Q |
207 |
acttcaacactttcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaaagtcaacacaaattaaagaatctaataggcctg |
306 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||||||||||| || | || | ||||| | | |||||||||||||| |||| | |
|
|
| T |
5643109 |
acttcaacaatatcaagtgaatctgggtccaatgcatgtgcaactgataataatgtggctgaagaaggattgtctaaaattaaagaatctgatag---ag |
5643013 |
T |
|
| Q |
307 |
agtggactttactggatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattggtgacattaagcttgtgacggtatttag |
406 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5643012 |
agtggactttattagatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattgctgacattaagcttgtgacggtatttag |
5642913 |
T |
|
| Q |
407 |
gctattttgcgtaatgtttctttggttcattgtaacattgcttgtaaggannnnnnnactgattttataatgttgtttttgactttgaagaggtgggctg |
506 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5642912 |
gctattttgcataatgtttctttggttcattgtaacattgcttgtaaggatttttttactgattttataatgttgtttttgactttgaagaggtgggctg |
5642813 |
T |
|
| Q |
507 |
tggatacaaatgaatatgc |
525 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5642812 |
tggatacaaatgaatatgc |
5642794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 46630340 - 46630136
Alignment:
| Q |
30 |
tattttgatatgaagtacactgtgccatatttaactttctctaatattgacaatggtatgatttcataaattaattatgatgatttgcttaagtttcttg |
129 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| | ||||| |||| ||||||||||||||||| |
|
|
| T |
46630340 |
tattttgatatgaagtacactgtaccatatttaactttctccaacattgacaatggtatgatttcatatttaaattacgatggtttgcttaagtttcttg |
46630241 |
T |
|
| Q |
130 |
cttgtagctttacc-gaattttttatgtt-attgtggttttccctgattgatacagcacatgccataatagaaagtgagacttcaacactttcaagtgaa |
227 |
Q |
| |
|
| |||| ||||||| | ||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||||| |
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|
| T |
46630240 |
catgtacctttaccggttttttttatgttgattgtggtttgccctgattgatacagcacctgccagaatagaaagcgagacttcaacactttctagtgaa |
46630141 |
T |
|
| Q |
228 |
tctgg |
232 |
Q |
| |
|
||||| |
|
|
| T |
46630140 |
tctgg |
46630136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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