View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14711_low_21 (Length: 260)
Name: NF14711_low_21
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_21 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 2057371 - 2057138
Alignment:
| Q |
16 |
tagacatatcaatttcaaaagctctaaggagctgtttaatccgtaacaactcattggttacaactgctaaagcacgatactcagcctcagtcgatgaacg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2057371 |
tagacatatcaatttcaaaagctctaaggagctgtttaatccataacaactcattggttacaactgctaaagcacgatactcagcctc-----------g |
2057283 |
T |
|
| Q |
116 |
tgactttgttgattgtttccttgacttccaagtaatcaagaattctccaagatagatgcaaaaccaattggttgatcatccacatatgttgtaactcgaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2057282 |
tgactttgttgattgtttccttgacttccaagtaatcaagaattctccaagatagatgcaaaatcaattggttgatcatccacatatgttgtaactcgaa |
2057183 |
T |
|
| Q |
216 |
gtgctacaaaactattacccgagccattggtaaataacgaattct |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2057182 |
gtgctacaaaactattacccgagccattggtaaataacgaattct |
2057138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University