View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14711_low_22 (Length: 259)

Name: NF14711_low_22
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14711_low_22
NF14711_low_22
[»] chr6 (8 HSPs)
chr6 (169-231)||(29063113-29063175)
chr6 (169-231)||(29101049-29101111)
chr6 (169-231)||(29117967-29118029)
chr6 (169-231)||(29120688-29120750)
chr6 (56-113)||(29063457-29063514)
chr6 (56-109)||(29101397-29101450)
chr6 (56-113)||(29118311-29118368)
chr6 (56-109)||(29121036-29121089)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 29063175 - 29063113
Alignment:
Q  169 caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtc 231  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29063175 caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtc 29063113  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 29101111 - 29101049
Alignment:
Q  169 caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtc 231  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29101111 caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtc 29101049  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 29118029 - 29117967
Alignment:
Q  169 caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtc 231  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29118029 caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtc 29117967  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 29120750 - 29120688
Alignment:
Q  169 caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtc 231  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29120750 caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtc 29120688  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 29063514 - 29063457
Alignment:
Q  56 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcctcttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29063514 aactttgggactgattgcttgttcaaattacaatacagtaagaaatactttcctcttt 29063457  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 29101450 - 29101397
Alignment:
Q  56 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29101450 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct 29101397  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 29118368 - 29118311
Alignment:
Q  56 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcctcttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29118368 aactttgggactgattgcttgttcaaattacaatacagtaagaaatactttcctcttt 29118311  T

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Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 29121089 - 29121036
Alignment:
Q  56 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29121089 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct 29121036  T

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