View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_low_23 (Length: 249)
Name: NF14711_low_23
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 16540320 - 16540485
Alignment:
| Q |
72 |
aagagaaagagatgattaagatagagagagtgggccaatttacctcaaggacttcaattggaaagtttcttgaactgacagaatcatataactgatcagt |
171 |
Q |
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| T |
16540320 |
aagagaaagagatgattatgatagagagagtgggccaatttacctcaaggacttcaattggaaagtttcttgaactgacagaatcatataactgatctgt |
16540419 |
T |
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| Q |
172 |
tctcttcttcttagaccttagcaacataggaagctcttgatcaaaatcatagctttgattaatatt |
237 |
Q |
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| T |
16540420 |
tctcttcttcttggaccttagcaacataggaagctcttgatcaaaatcatagcttggattaatatt |
16540485 |
T |
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Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16539390 - 16539460
Alignment:
| Q |
1 |
gataagtctgatttggtatttgataggttgtatgaacataaaaaattaggctaatatattttctctattag |
71 |
Q |
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| T |
16539390 |
gataagtctgatttggtatttgataggttgtatgaacataaaaaatgaggctaatatattttctctattag |
16539460 |
T |
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