View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_low_26 (Length: 227)
Name: NF14711_low_26
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 7055625 - 7055409
Alignment:
| Q |
7 |
atgttttgagtgatgaacagattaaggagtgtgaagagcttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgt |
106 |
Q |
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| T |
7055625 |
atgttttgagtgatgaacagattaaggagtgtgaagagcttggaattttggttgatagagatgatcagggtactattcttcagattttcactaagcctgt |
7055526 |
T |
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| Q |
107 |
tggagataggtatgaaatgcacgtactctttgaatcatatcaatataatactcattttattgccttgatttcattattatcaatttgttttatatattgg |
206 |
Q |
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| T |
7055525 |
tggagataggtatgaaatgc----actctttgaatcatatcaatataatactcattttattgccttgatttcattattatcaatttgttttatatattgg |
7055430 |
T |
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| Q |
207 |
gcttggaattcttatttttgc |
227 |
Q |
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| T |
7055429 |
gcttggaattcttatttttgc |
7055409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 39641763 - 39641651
Alignment:
| Q |
7 |
atgttttgagtgatgaacagattaaggagtgtgaagagcttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgt |
106 |
Q |
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| T |
39641763 |
atgttttgagtgatgaacagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccat |
39641664 |
T |
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| Q |
107 |
tggagataggtat |
119 |
Q |
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| T |
39641663 |
tggagataggtat |
39641651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 39680486 - 39680599
Alignment:
| Q |
7 |
atgttttgagtgatgaacagattaaggagtgtgaagagcttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||||||| || |||||| | |
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| T |
39680486 |
atgttttgagtgatgaacagattaaggagtgtgaagagcttgggattctggttgatagagatgatcagggtactctgcttcagatttttaccaagcctat |
39680585 |
T |
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| Q |
107 |
tggagataggtatg |
120 |
Q |
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||| |||||||||| |
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| T |
39680586 |
tggtgataggtatg |
39680599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 39637134 - 39637015
Alignment:
| Q |
7 |
atgttttgagtgatgaacagattaaggagtgtgaagagcttggag-ttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctg |
105 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
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| T |
39637134 |
atgttttgaatgatgaacagattaaggagtgtgaagagctttgggattttggttgatagagatgatcagggtactttgcttcagatttttactaagccta |
39637035 |
T |
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| Q |
106 |
ttggagataggtatgaaatg |
125 |
Q |
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|||| |||||||||| |||| |
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| T |
39637034 |
ttggtgataggtatgtaatg |
39637015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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