View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_low_3 (Length: 518)
Name: NF14711_low_3
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_3 |
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| [»] scaffold0655 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Original strand, 23293893 - 23294382
Alignment:
| Q |
19 |
caatctgtctgaagacgattatcctcaaggcaaccttgtccatctgagatataacaatttctaactaataagccagattcttatctattgtactagagct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23293893 |
caatctgtctgaagacgattatcctcaaggcaaccttgtccatctgagatataacaatttctaactaataagccagattcttatctattgtactagagct |
23293992 |
T |
|
| Q |
119 |
taatgcattcaacttctgcaaagcttaatccacctgagttctgagtctgtccccccttaatatgaaaggtttgaagaccagaggttgtaagtctctcttc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||| |
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| T |
23293993 |
taatgcattcaacttctgcaaagcttaatccacctgagttctgagcctgtccccccttaatatgaaaggtttgaagaccaaagtttgtaggtctctcttc |
23294092 |
T |
|
| Q |
219 |
aaacaattcatgtaccctatcgtagataataaaacttatgtcatctaaggaagggtagtgaggaggaggtgtagggacaaataaacagttagatagtaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23294093 |
aaacaattcatgtaccctatcgtagataataaaacttatgtcctccaaggaagggtagtgaggaggaggtgtagggacaaataaacagttagatagtaca |
23294192 |
T |
|
| Q |
319 |
caagtatttaaaacttagtactactcttgtcaagaacaattacaaataagtaaatctacaaaataatcacggtttcataatcaacacatcgtttatcaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23294193 |
caagtatttaaaacttagtactactcttgtcaagaacaattacaaataagtaaatcaacagaataatcacggtttcataatcaacacatcgtttatcaag |
23294292 |
T |
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| Q |
419 |
aatttaatcataattagtattaaatattgcattactccgacaaagaagacaaagataatttgaagaatcctaatcaccgtctaacctatg |
508 |
Q |
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| T |
23294293 |
aatttaatcataattagtattaaatattgcattactccgacaaagaagacaaagataatttgaagaatcctaatcaccgtctaacctatg |
23294382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 358 - 505
Target Start/End: Complemental strand, 26472015 - 26471868
Alignment:
| Q |
358 |
ttacaaataagtaaatctacaaaataatcacggtttcataatcaacacatcgtttatcaagaatttaatcataattagtattaaatattgcattactccg |
457 |
Q |
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|||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||||| ||| |
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| T |
26472015 |
ttacaaataagtaaatctacgaatcaatcacggtttcataattgacatgtcgtttatcaagcgcttaatcataattagtattaaatattacattaatcca |
26471916 |
T |
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| Q |
458 |
acaaagaagacaaagataatttgaagaatcctaatcaccgtctaacct |
505 |
Q |
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| T |
26471915 |
ataaagaagatagaggggattcgaagaatcctaatcatcgtctaacct |
26471868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 498
Target Start/End: Complemental strand, 29845998 - 29845884
Alignment:
| Q |
384 |
atcacggtttcataatcaacacatcgtttatcaagaatttaatcataattagtattaaatattgcattactccgacaaagaagacaaagataatttgaag |
483 |
Q |
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||||||||||||||||||| | ||||||||||| ||||| |||||||| | || ||||||||||||| ||||||||||||| | ||| |||| ||| |
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| T |
29845998 |
atcacggtttcataatcaaactaccgtttatcaagtatttagtcataattggaataaaatattgcattaaaccgacaaagaagaaagagagaattcaaag |
29845899 |
T |
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| Q |
484 |
aatcctaatcaccgt |
498 |
Q |
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| T |
29845898 |
aattctaatcaccgt |
29845884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 495
Target Start/End: Complemental strand, 29861591 - 29861480
Alignment:
| Q |
384 |
atcacggtttcataatcaacacatcgtttatcaagaatttaatcataattagtattaaatattgcattactccgacaaagaagacaaagataatttgaag |
483 |
Q |
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||||||||||||||||||| | ||||||||||| | || |||||||| | || ||||||||||||| | ||| ||||| |||||| ||||| ||| |
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| T |
29861591 |
atcacggtttcataatcaaattaccgtttatcaagtacatagtcataattggaataaaatattgcattaaactgacgaagaatacaaaggaaatttaaag |
29861492 |
T |
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| Q |
484 |
aatcctaatcac |
495 |
Q |
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| T |
29861491 |
aattctaatcac |
29861480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 467
Target Start/End: Original strand, 34077986 - 34078059
Alignment:
| Q |
393 |
tcataatcaacacatcgtttatcaagaatttaatcataattagtattaaatattgcattactccgacaaagaaga |
467 |
Q |
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| T |
34077986 |
tcataatcaac-catcgtttatcaagtatttagtcatagttgatattgactattgtattaatccgacaaagaaga |
34078059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 1240 - 1319
Alignment:
| Q |
390 |
gtttcataatcaacacatcgtttatcaagaatttaatcataattagtattaaatattgcattactccgacaaagaagaca |
469 |
Q |
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| T |
1240 |
gtttcataaccaacacatcatttatcaagcattcaatcctaattggtattgtatattgcataagtccgacaaagaagaca |
1319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 26503508 - 26503429
Alignment:
| Q |
427 |
cataattagtattaaatattgcattactccgacaaagaagacaaagataatttgaagaatcctaatcaccgtctaaccta |
506 |
Q |
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| T |
26503508 |
cataattgatatcaaatattgcattagtttgacaaagaagacaaaggagattagaagaatcctaatcgctgtctaaccta |
26503429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 452
Target Start/End: Complemental strand, 6975415 - 6975350
Alignment:
| Q |
387 |
acggtttcataatcaacacatcgtttatcaagaatttaatcataattagtattaaatattgcatta |
452 |
Q |
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| T |
6975415 |
acggtttcataatcaaaccatcgtttattaagtacttagtcataattggtattgaatattggatta |
6975350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 12882419 - 12882344
Alignment:
| Q |
391 |
tttcataatcaacacatcgtttatcaagaatttaatcataattagtattaaatattgcattactccgacaaagaag |
466 |
Q |
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| T |
12882419 |
tttcataattaaaccatcgtttatcaagtatttaatcatagttcatattgaatattgtattactttgacaaagaag |
12882344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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