View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_low_5 (Length: 475)
Name: NF14711_low_5
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 2 - 459
Target Start/End: Original strand, 6023643 - 6024100
Alignment:
| Q |
2 |
ataattctgagacaatggtatacccccacgttaagaaagagtgtatttatagcttcatttgatgtttacttgtaccttccccctggtttgctctttaaca |
101 |
Q |
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| T |
6023643 |
ataattctgagacaatggtatacccccacgttaagaaagagtgtatttatagctttatttgttgtttacttgtaccttccccctggtttgctctttaaca |
6023742 |
T |
|
| Q |
102 |
tgactgattgatgacttatttttgtgtcattttgaccaacctttatacaacatcaccaagtttatctattgtctatctttatgaaatgcttgttatcttt |
201 |
Q |
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| T |
6023743 |
tgactgattgatgacttatttttgtgtcattttgaccaacctttatacaacataaccaagtttatctattgtctatctttatgaaatgcttgttatcttt |
6023842 |
T |
|
| Q |
202 |
tnnnnnnnngtattctactttataatgcctaattaacttaaacaatgagagaataaagttcagctgcttttaagatacacaaacaactaaaatatatgat |
301 |
Q |
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| T |
6023843 |
caaaaaaaagtattctcctttataatgcctaattaacttaaacaatgagagaataaagttcagctgcttttaagatacacaaacaactaaaatatatgat |
6023942 |
T |
|
| Q |
302 |
attgataggtacatcaaattgggatctaactcttctaaaataaacttatttttaagtgtatattaagtggtatcaatcgtttacaacaaattaaaggtat |
401 |
Q |
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| T |
6023943 |
attgataggtacatcaaattgggatctaactcttctaaaatgaacttattttaaagtgtatattaagcggtatcaatcgtttacatcaaattaaaggtag |
6024042 |
T |
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| Q |
402 |
atattgcatgtatatcataataaatcatgataatattataataacaaaccttaatttc |
459 |
Q |
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| T |
6024043 |
atattgcatgtatatcataataaatcatgataatattataataacaaaccttaatttc |
6024100 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 37860501 - 37860457
Alignment:
| Q |
384 |
acaacaaattaaaggtatatattgcatgtatatcataataaatca |
428 |
Q |
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| T |
37860501 |
acaacaaattaaaggtatatattgtaggtacatcataacaaatca |
37860457 |
T |
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