View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_low_6 (Length: 470)
Name: NF14711_low_6
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Complemental strand, 4052582 - 4052135
Alignment:
| Q |
20 |
gaatgtgcccacgtactttcccttctctgcttctataaatacctctgttacgtccctccccaccatgtatcagaagcaataaatgtttcataataatggt |
119 |
Q |
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| T |
4052582 |
gaatgtgcccacgtactttcccttctctgcttctataaatacctctgttacgtccctccccaccatgtatcagaagcaataaatgtttcataataatggt |
4052483 |
T |
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| Q |
120 |
atctacctagcaagcattttaattaaataatttatttatttaaaatgagttagttggtttattataagcttcaactcaatgctatagctcttgtattttt |
219 |
Q |
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| T |
4052482 |
atctacctagcaagcattttaattaaataatttatttatttaaaatgagttagttggtttattataagcttcaactcaatgctatagctcttgtattttt |
4052383 |
T |
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| Q |
220 |
tgtgtgaaagaatctgttaagctcaggagggatagcgccatagaatgtcttcnnnnnnnggttccattttattgattgatcttctcttgcgctatccatc |
319 |
Q |
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| T |
4052382 |
tgtgtgaaagaatctgttaagctcaggagggatagcgccatagaatgtcttctttttttggttccattttattgattgatcttctcttgcgctatccatc |
4052283 |
T |
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| Q |
320 |
ctgagtttcatggcttcttcatactctcttccatctcttggttcatcatcctgcataatttaaggtacccttttcaggtttttggctaattgttatgatg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4052282 |
ctgagtttcatggcttcttcatactctcttccatctcttggttcatcatcctgcataatttaaggtacccttttcaggtttttggctaattgttatgatg |
4052183 |
T |
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| Q |
420 |
ttcatcatcatgcactatacaaggttgtttcattatacttttgttgtt |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4052182 |
ttcatcatcatgcactatacaaggttgtttcattatacttttgttgtt |
4052135 |
T |
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