View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_low_8 (Length: 419)
Name: NF14711_low_8
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 16538987 - 16539375
Alignment:
| Q |
19 |
ataaagaaagtgaaattaaaggataaaaagtaacctcaatgaagactgtcttcaaaagcctgcctgacaaagaggtgatgttggcagtaataattttaag |
118 |
Q |
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| T |
16538987 |
ataaagaaagtgaaattaaaggataaaaagtaacctcaatgaagactgtcttcaaaagcctgcctgaaaaagaggtgatgttggcagtaataattttaag |
16539086 |
T |
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| Q |
119 |
cttcaaagattcgaaaacttcacacaattttaccattgtgtctgcccttttgttacatgtcaagctcactaccattgtattctctcccatgtatgtaacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16539087 |
cttcaaagattcgaaaacttcacacaattttaccattgtgtctgcccttttgttacatgtcaagctcactaccattgtattctctcccatgtatgtaacc |
16539186 |
T |
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| Q |
219 |
ctaagctgcactccaccatatatcaaattacacaatcataattaatgactttaaaaattcaaagataattataaaattataatcatcacaccccacattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16539187 |
ctaagctgcactccaccatatatcaaattacacaatcataattaatgactttaaaaattcaaagataattataaaattataatcatcacaccccacattt |
16539286 |
T |
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| Q |
319 |
atatttttagcatcaataatacaagagagaggtgatgccttacaatctcttctttaatatctatatttgttgttgggggttggttgttaac |
409 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16539287 |
atttttttagcatcaataatacaagagagaggtgatgccttacaatctcttcttta--atctatatttgttgttgggggttggttgttaac |
16539375 |
T |
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