View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14712_high_11 (Length: 353)
Name: NF14712_high_11
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14712_high_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 48707470 - 48707145
Alignment:
| Q |
1 |
taatggtatgaacttttcagatgcaaatattttcttctgcttcttcccttaaacaagaatttttcatggcatgaactcttcagattcaaagaagtgtctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48707470 |
taatggtatgaacttttcagatgcaaatattttcttctgcttcttctcctaaacaagaatttttcatggcatgaactcttcagattaaaagaagtgtctt |
48707371 |
T |
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| Q |
101 |
tggttttggtgactgcaatgaaataaaccatgttacagaacataaattcgattcattcctgataaactatatcaacaagctttccaagttttcttgattt |
200 |
Q |
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| T |
48707370 |
tggttttcgtgactgcaatgaaataaaccatgttacataacataaattcgattcattcctgataaactatatcaacaagctttccaagttttcttgattt |
48707271 |
T |
|
| Q |
201 |
ctggtatgcatttagttgaagaagcttattatccatctcatcactcgctatagatcgaagctgaaaaagaagtacat-acttaggacatgtccataaatt |
299 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
48707270 |
ctggtatgcatttagttgaagaagcttattaaccatctcatcactcgctatagatcgaagctgaaaaagaagtacataacttacgacatgtccataaatt |
48707171 |
T |
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| Q |
300 |
gtttcagtttatttctataggcttat |
325 |
Q |
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| T |
48707170 |
gtttcagtttatttctataggcttat |
48707145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 13856627 - 13856760
Alignment:
| Q |
3 |
atggtatgaacttttcagatgcaaatattttcttctgcttcttcccttaaacaagaatttttcatggcatgaactcttcagattcaaagaagtgtctttg |
102 |
Q |
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| T |
13856627 |
atggcatgaacatttcagatgcaaatcttttcttctgcttcttatccgaaacaaggatttttcatggcatgaattcttcagattcaaagaagtgtcttta |
13856726 |
T |
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| Q |
103 |
gttttggtgactgcaatgaaataaaccatgttac |
136 |
Q |
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| T |
13856727 |
gttttggtaactgctatgaaataaaccatgttac |
13856760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 278
Target Start/End: Original strand, 16022487 - 16022605
Alignment:
| Q |
160 |
tgataaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaagaagcttattatccatctcatcactcgctatagatcgaa |
259 |
Q |
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|||||||||||||| |||| ||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| | || | ||| |
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| T |
16022487 |
tgataaactatatcgacaaactttccaggttttcttgatttctcatatgcatatagttgaagcagcttattatccatctcatcactcgcaacagcttgaa |
16022586 |
T |
|
| Q |
260 |
gctgaaaaagaagtacata |
278 |
Q |
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| T |
16022587 |
gctgaaataggagtacata |
16022605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 14389637 - 14389549
Alignment:
| Q |
160 |
tgataaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaagaagcttattatccatctcatcactcgc |
248 |
Q |
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| T |
14389637 |
tgataaactatatcaacaaactttccaagctttcttgatttgtcaaatgcatatagttgaagaagcttattatccatcccaccactcgc |
14389549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 16022319 - 16022370
Alignment:
| Q |
93 |
agtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacata |
144 |
Q |
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| T |
16022319 |
agtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacata |
16022370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 14389827 - 14389775
Alignment:
| Q |
92 |
aagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacata |
144 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
14389827 |
aagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacata |
14389775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 13881581 - 13881660
Alignment:
| Q |
163 |
taaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaagaagcttattatccatctcatca |
243 |
Q |
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| T |
13881581 |
taaactatatcgacaaacttttcaagttttattgattt-tcatatgcatatagttgaagaagcttaatatccatctcatca |
13881660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 13856781 - 13856819
Alignment:
| Q |
144 |
aaattcgattcattcctgataaactatatcaacaagctt |
182 |
Q |
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|||||| ||||||||||||||||||||||||| |||||| |
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| T |
13856781 |
aaattccattcattcctgataaactatatcaaaaagctt |
13856819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 13856814 - 13856870
Alignment:
| Q |
222 |
aagcttattatccatctcatcactcgctatagatcgaagctgaaaaagaagtacata |
278 |
Q |
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||||||||||||||| || |||| ||||| |||| ||||||||| | |||||||||| |
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| T |
13856814 |
aagcttattatccatttcctcacacgctacagattgaagctgaataggaagtacata |
13856870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Original strand, 4844393 - 4844421
Alignment:
| Q |
325 |
ttgcttatactccctccgtccctaattat |
353 |
Q |
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| T |
4844393 |
ttgcttatactccctccgtccctaattat |
4844421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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