View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14712_high_2 (Length: 539)

Name: NF14712_high_2
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14712_high_2
NF14712_high_2
[»] chr3 (2 HSPs)
chr3 (13-524)||(1173826-1174337)
chr3 (385-461)||(9482309-9482385)
[»] chr4 (2 HSPs)
chr4 (384-452)||(54381377-54381445)
chr4 (80-173)||(54381085-54381178)
[»] chr8 (3 HSPs)
chr8 (384-509)||(13822871-13822996)
chr8 (396-457)||(26496129-26496190)
chr8 (385-461)||(16735216-16735292)
[»] chr2 (2 HSPs)
chr2 (384-452)||(15173918-15173986)
chr2 (84-158)||(15174200-15174274)
[»] chr7 (1 HSPs)
chr7 (377-438)||(43433466-43433527)


Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 13 - 524
Target Start/End: Original strand, 1173826 - 1174337
Alignment:
Q  13 gagaagaaagatgcaagcaagattgaccaaacaagaacaatggtaggagtcctattattccttccagtcaaacctttaaggaatggaaacaagtgaacaa 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1173826 gagaagaaagatgcaagtaagattgaccaaacaagaacaatggtaggagttctattattccttccagtcatacctttaaggaatggaaacaagtgaacaa 1173925  T
Q  113 tcacccaaaaggaaaacattagtttcccaaataatggtccccatgattcaaaaccattgttaattgcatgtgataatccagcaaccatagcaattatgtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1173926 tcacccaaaaggaaaacattagtttcccaaataatggtccccatgattcaaaaccattgttaattgcatgtgataatccagcaaccatagcaattatgtt 1174025  T
Q  213 taatataagcaatgttgttggtatgattaataatgttgtccacttcaaaccaaacattatctcattatgttccttgtcttcatcatctcttgttgatttt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  1174026 taatataagcaatgttgttggtatgattaataatgttgtccacttcaaaccaaacattatctcattgtgttctttgtcttcatcatctcttgttgatttt 1174125  T
Q  313 gatgttacaatgaagttgctatttacacctgttaggactttgaatagacctacaaatacagcatataaatttgctgaaacacctccaattacccaaaatt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1174126 gatgttacaatgaagttgctatttacacctgttaggactttgaatagacctacaaatacagcatataaatttgctgaaacacctccaattacccaaaatt 1174225  T
Q  413 gctcatttctccaccattcatcaattgtaactccactccacctcatctctagcatacttgttgtgaaaatgcaaatgaaaagagaaataaaccatattcc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1174226 gctcatttctccaccattcatcaattgtaactccactccacctcatctctagcatacttgttgtgaaaatgcaaatgaaaagagaaataaaccacattcc 1174325  T
Q  513 agctgtattact 524  Q
    ||||||||||||    
T  1174326 agctgtattact 1174337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 385 - 461
Target Start/End: Complemental strand, 9482385 - 9482309
Alignment:
Q  385 gctgaaacacctccaattacccaaaattgctcatttctccaccattcatcaattgtaactccactccacctcatctc 461  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||    
T  9482385 gctgaaacaccaccaataacccaaaattgttcatttctccaccattcatcaattccaacaccactccacctcatctc 9482309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 452
Target Start/End: Original strand, 54381377 - 54381445
Alignment:
Q  384 tgctgaaacacctccaattacccaaaattgctcatttctccaccattcatcaattgtaactccactcca 452  Q
    |||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||  | |||||||||||    
T  54381377 tgctgatacaccaccaatgacccagaattgctcatttctccaccattcctcaatgctgactccactcca 54381445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 54381085 - 54381178
Alignment:
Q  80 tcaaacctttaaggaatggaaacaagtgaacaatcacccaaaaggaaaacattagtttcccaaataatggtccccatgattcaaaaccattgtt 173  Q
    |||||||||||||||||||| | |  || ||||||||||| |||||||| |  ||||| |||||||  |||||||||||||   ||||||||||    
T  54381085 tcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaagagttttccaaatagaggtccccatgattggtaaccattgtt 54381178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 509
Target Start/End: Original strand, 13822871 - 13822996
Alignment:
Q  384 tgctgaaacacctccaattacccaaaattgctcatttctccaccattcatcaattgtaactccactccacctcatctctagcatacttgttgtgaaaatg 483  Q
    |||||| ||||| || || |||||||| || || ||||||||||| |||||||||  ||| |||||||| ||||||||||| || |  |||| ||| |||    
T  13822871 tgctgacacaccaccgataacccaaaactgttcgtttctccaccactcatcaattccaacaccactccatctcatctctaggattccagttgcgaagatg 13822970  T
Q  484 caaatgaaaagagaaataaaccatat 509  Q
     |||  || ||||| |||||||||||    
T  13822971 gaaagaaagagagagataaaccatat 13822996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 26496129 - 26496190
Alignment:
Q  396 tccaattacccaaaattgctcatttctccaccattcatcaattgtaactccactccacctca 457  Q
    |||||| ||||||||||| | ||||||||||||||| ||||   ||||||||||||| ||||    
T  26496129 tccaatgacccaaaattgttgatttctccaccattcctcaagactaactccactccatctca 26496190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 461
Target Start/End: Complemental strand, 16735292 - 16735216
Alignment:
Q  385 gctgaaacacctccaattacccaaaattgctcatttctccaccattcatcaattgtaactccactccacctcatctc 461  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||| || |  |||  ||| |||||||| ||||||||    
T  16735292 gctgacacacccccaatgacccaaaattgttcatttctccaccactcgtggattccaacaccactccatctcatctc 16735216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 452
Target Start/End: Complemental strand, 15173986 - 15173918
Alignment:
Q  384 tgctgaaacacctccaattacccaaaattgctcatttctccaccattcatcaattgtaactccactcca 452  Q
    |||||| ||||||||||| ||||| |||||||| ||||||||||| || || || | ||||||||||||    
T  15173986 tgctgatacacctccaataacccagaattgctcgtttctccaccagtcttcgatggcaactccactcca 15173918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 15174274 - 15174200
Alignment:
Q  84 acctttaaggaatggaaacaagtgaacaatcacccaaaaggaaaacattagtttcccaaataatggtccccatga 158  Q
    |||||||||||| ||| | || |||||||| |||||||| | ||| | ||| ||||||||||| |||||||||||    
T  15174274 acctttaaggaaaggatataaatgaacaatgacccaaaatgcaaagaatagcttcccaaataaaggtccccatga 15174200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 43433466 - 43433527
Alignment:
Q  377 ataaatttgctgaaacacctccaattacccaaaattgctcatttctccaccattcatcaatt 438  Q
    |||||| ||| || ||||| || || ||||||||||| |||||||||||||| |||||||||    
T  43433466 ataaatgtgcagacacaccaccgatcacccaaaattgttcatttctccaccactcatcaatt 43433527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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