View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14712_high_21 (Length: 252)
Name: NF14712_high_21
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14712_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 3604822 - 3605049
Alignment:
| Q |
20 |
atacgctacctccagcaacaaccaaagggtctttttgccctgttctctgtctttgatcaacttccannnnnnnngt--ggattttctacggtatatatac |
117 |
Q |
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| T |
3604822 |
atacgctacctccagcaacaaccaaagggtctttttgccctgttctctgtctttgatcaacttccattttttttttttggattttctacgctatatatac |
3604921 |
T |
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| Q |
118 |
gatgcaataaaatatgtataatacatagttacatttggttttttaatttgaaattgcttgcaaaatgtcaaataaaagaatatatttttacacaaatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3604922 |
gatgcaataaaatatgtataatacatagttacatttggttttttaatttgaaattgcttgcaaaatgtcaaataaaagaatatatttttacacaaatttg |
3605021 |
T |
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| Q |
218 |
aacaaagttttaggtcgtttttcatatc |
245 |
Q |
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||||||||||||||| |||||||||||| |
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| T |
3605022 |
aacaaagttttaggttgtttttcatatc |
3605049 |
T |
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