View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14712_high_4 (Length: 505)
Name: NF14712_high_4
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14712_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Original strand, 4487172 - 4487658
Alignment:
| Q |
8 |
gagtgagatgaagagatagaggtgaaaaatgttaagcctattagcacaactatttaactgtcatttaagatgggataaattaaggttttgaactctacca |
107 |
Q |
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| T |
4487172 |
gagtgacatgaagagataggggtgaaaaatgttaagcctattagcacaactatttaactgtcatttaagatgggataaattaaggttttgaactctacca |
4487271 |
T |
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| Q |
108 |
tttaagttggttcgtcctacttaatccgtgtaaaaataaagtgacatggttggacaagtggtttgtaggtaatttacaaaatctctttctttttctactt |
207 |
Q |
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| T |
4487272 |
tttaagttggttcgtcctacttaatccgtgtaaaaataaagtgacatggttggactagtggtttgtaggtaatttacaaaatctctttctttttctactt |
4487371 |
T |
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| Q |
208 |
gagttatttatattttctgcaactattaacatattctctctttacagaccaatgaacttagagctttatttttgcttt-----nnnnnnnnnnngttaga |
302 |
Q |
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| T |
4487372 |
gagttatttatattttctgcaactattaacatattctctctttacagaccaatgaacttagatctttatttttgctttaaaaaaaaaaaaaaaagttaga |
4487471 |
T |
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| Q |
303 |
gctttactttgttaaaaagaaactctgagcnnnnnnncttcgatacat--tnnnnnnncttagaacttgattgtttgcgtaagaattcttggattacgtt |
400 |
Q |
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|||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487472 |
gctttactttgttaaaaagaaactttgagctttttttctttgatacataaaaaaaaaacttagaacttgattgtttgcgtaagaattcttggattacgtt |
4487571 |
T |
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| Q |
401 |
gaattataattaatggactgcctttgaagttttcttttaatgtttttgatagatcaactcgccattaggcaatggtcttagtttttg |
487 |
Q |
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| T |
4487572 |
gaattataattaatggactgtctttgaagttttctattaatgtttttgatagatcaactcgccattaggcaattgtcttagtttttg |
4487658 |
T |
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