View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14712_high_5 (Length: 473)

Name: NF14712_high_5
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14712_high_5
NF14712_high_5
[»] chr3 (25 HSPs)
chr3 (13-455)||(8538920-8539360)
chr3 (180-449)||(28151697-28151962)
chr3 (180-443)||(28037492-28037752)
chr3 (180-449)||(17744323-17744589)
chr3 (180-449)||(19045643-19045909)
chr3 (279-447)||(28161925-28162090)
chr3 (279-447)||(28185968-28186133)
chr3 (274-446)||(11421038-11421206)
chr3 (279-447)||(28150016-28150181)
chr3 (251-372)||(27458745-27458863)
chr3 (180-310)||(11421402-11421532)
chr3 (279-421)||(28479791-28479930)
chr3 (279-421)||(28508974-28509113)
chr3 (301-449)||(27920289-27920436)
chr3 (183-239)||(27430814-27430870)
chr3 (180-235)||(27920463-27920518)
chr3 (336-449)||(27954374-27954483)
chr3 (285-372)||(28136448-28136532)
chr3 (230-313)||(26139099-26139182)
chr3 (384-447)||(27776571-27776634)
chr3 (29-87)||(19185073-19185131)
chr3 (13-66)||(27310739-27310792)
chr3 (29-73)||(20952399-20952443)
chr3 (230-346)||(26127292-26127408)
chr3 (230-310)||(28162801-28162881)
[»] chr2 (5 HSPs)
chr2 (180-449)||(8020879-8021143)
chr2 (29-70)||(16109973-16110014)
chr2 (13-74)||(20374124-20374185)
chr2 (29-61)||(3914268-3914300)
chr2 (383-431)||(22393515-22393563)
[»] scaffold0922 (1 HSPs)
scaffold0922 (180-396)||(1840-2051)
[»] scaffold0257 (1 HSPs)
scaffold0257 (293-447)||(19126-19277)
[»] scaffold1142 (1 HSPs)
scaffold1142 (230-313)||(538-621)
[»] chr4 (4 HSPs)
chr4 (13-68)||(39117220-39117275)
chr4 (29-68)||(21079848-21079887)
chr4 (13-55)||(34657920-34657962)
chr4 (14-74)||(33040582-33040642)
[»] scaffold0021 (1 HSPs)
scaffold0021 (13-67)||(131446-131500)
[»] scaffold0416 (1 HSPs)
scaffold0416 (7-68)||(14826-14887)
[»] chr7 (3 HSPs)
chr7 (29-74)||(37375019-37375064)
chr7 (29-74)||(38993120-38993165)
chr7 (26-62)||(2040098-2040134)
[»] chr5 (6 HSPs)
chr5 (13-74)||(22602038-22602099)
chr5 (29-74)||(28637628-28637673)
chr5 (29-68)||(16987828-16987867)
chr5 (13-87)||(2259404-2259478)
chr5 (29-74)||(21027039-21027084)
chr5 (29-61)||(17764939-17764971)
[»] chr1 (6 HSPs)
chr1 (29-74)||(21487859-21487904)
chr1 (5-68)||(19054383-19054447)
chr1 (21-88)||(18332716-18332783)
chr1 (13-68)||(33064827-33064882)
chr1 (24-74)||(10423819-10423869)
chr1 (21-55)||(12629264-12629298)
[»] chr8 (2 HSPs)
chr8 (13-68)||(18036823-18036878)
chr8 (13-68)||(29187863-29187918)
[»] chr6 (6 HSPs)
chr6 (29-67)||(7242898-7242936)
chr6 (13-55)||(24617740-24617782)
chr6 (113-150)||(8511076-8511113)
chr6 (13-74)||(13580163-13580224)
chr6 (17-73)||(8511146-8511202)
chr6 (24-56)||(13570493-13570525)
[»] scaffold0196 (1 HSPs)
scaffold0196 (24-56)||(792-824)
[»] scaffold0043 (1 HSPs)
scaffold0043 (383-431)||(52833-52881)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 455
Target Start/End: Original strand, 8538920 - 8539360
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatcttatgcaaccaaacacaaaacttttctttttnnnnnnnnggaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||   ||||||||        |||||    
T  8538920 catcaagggaaaacaccgacatcccaactagattggcaccccgat-aacccccatcttatgcaaccaaacaaaaaaaaattctttttaaaaaaaaggaga 8539018  T
Q  113 aaaatatgtacaagaggggggactataccaaaactctccaataacgatnnnnnnnnnnnnnnnnnnntaccttcagaaggctttgaaggagactgagatg 212  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||    
T  8539019 agaatatgtacaagtggggggactataccaaaactctccaataacgataaaaaaaaaataaaaaaa-taccttcagaaggctttgaaggagactgagatg 8539117  T
Q  213 gaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatgacaacatcatcatttag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8539118 gaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatggcaacatcatcatttag 8539217  T
Q  313 aaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggaaacttaagaaaataaaactgatccaaggattctt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8539218 aaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattctt 8539317  T
Q  413 caccttgattaatattagtgttactagtttcctgccaaagttt 455  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8539318 caccttgattaatattagtgttactagtttcctgccaaagttt 8539360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 180 - 449
Target Start/End: Complemental strand, 28151962 - 28151697
Alignment:
Q  180 taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatt 279  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||| |  |||||||| | ||||| || || | ||||    
T  28151962 taccttcagaaggctttgaaggaaactgagatgcaatagaagagggtcttgatttggaaactaatatgttatcatcctttgaaaactgatcctcagtatt 28151863  T
Q  280 tgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggaa 379  Q
    ||||||| |||||||||||  ||||||||||||| || ||| ||||| | ||||||| ||||||| | ||||||   ||||| ||||||| ||  ||| |    
T  28151862 tgagcttgctttcatgacattatcatcatttagagaaactg-acaaaagatgggaaacaagagagctaaacttc---aaaataaaaagggcgatgaggta 28151767  T
Q  380 acttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgcca 449  Q
    ||||||||||||||||  ||||||| |||||||||||||||| |  ||||||||||||||||||||||||    
T  28151766 acttaagaaaataaaagcgatccaaagattcttcaccttgatcatcattagtgttactagtttcctgcca 28151697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 180 - 443
Target Start/End: Complemental strand, 28037752 - 28037492
Alignment:
Q  180 taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatt 279  Q
    |||||||||||||| |||||||| | ||||||| |||| ||||| ||||||||||||||||||| || || |||||||||| ||||| || || ||||||    
T  28037752 taccttcagaaggcattgaaggaaaatgagatgcaatagaagagggtcttgatttggaaactaacatgtcatcatccttagaaaactgatcctcaatatt 28037653  T
Q  280 tgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggaa 379  Q
    ||| |||||||||||||||  |||||||||| || || ||||||| | ||||| ||||||| ||||| ||||||   ||||||||||||||||  ||| |    
T  28037652 tgaacttactttcatgacattatcatcatttggataaactgaacagaaggtggaaaagaagcgagttaaacttc---aaaatgaaaagggtgatgaggta 28037556  T
Q  380 acttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttc 443  Q
    |||| ||||||||| |||||||||| || |||| |||||||  |  ||||||||||||||||||    
T  28037555 actttagaaaataacactgatccaaagagtctttaccttgaccatcattagtgttactagtttc 28037492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 180 - 449
Target Start/End: Original strand, 17744323 - 17744589
Alignment:
Q  180 taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatt 279  Q
    ||||| ||| ||||||||||||| |||| |||| |||||||||  || |||||||||||||||||||||| ||||  |||||||| | || || ||||||    
T  17744323 tacctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaatatt 17744422  T
Q  280 tgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggaa 379  Q
    ||||||||||||||  ||| |||||||||||||| || ||| |||||||||| |||||||||||||||||||||   ||||||||||| | ||  ||| |    
T  17744423 tgagcttactttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttc---aaaatgaaaagagcgatgaggta 17744519  T
Q  380 acttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgcca 449  Q
    ||||||||||||||||  ||||||| |||| || |||||| | |  |||||| || ||||||||||||||    
T  17744520 acttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgcca 17744589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 180 - 449
Target Start/End: Original strand, 19045643 - 19045909
Alignment:
Q  180 taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatt 279  Q
    ||||| ||| ||||||||||||| |||| |||| |||||||||  || |||||||||||||||||||||| ||||  |||||||| | || || ||||||    
T  19045643 tacctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaatatt 19045742  T
Q  280 tgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggaa 379  Q
    ||||||||||||||  ||| |||||||||||||| || ||| |||||||||| |||||||||||||||||||||   ||||||||||| | ||  ||| |    
T  19045743 tgagcttactttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttc---aaaatgaaaagagcgatgaggta 19045839  T
Q  380 acttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgcca 449  Q
    ||||||||||||||||  ||||||| |||| || |||||| | |  |||||| || ||||||||||||||    
T  19045840 acttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgcca 19045909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 279 - 447
Target Start/End: Complemental strand, 28162090 - 28161925
Alignment:
Q  279 ttgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagga 378  Q
    ||||| ||||||| |||||  |||| ||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  ||      
T  28162090 ttgaggttacttttatgacggcatcgtcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagat 28161994  T
Q  379 aacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgc 447  Q
    ||||||||||||||||| |||||||| || ||||||||||||| |  ||||||||||||||||||||||    
T  28161993 aacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcattagtgttactagtttcctgc 28161925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 279 - 447
Target Start/End: Complemental strand, 28186133 - 28185968
Alignment:
Q  279 ttgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagga 378  Q
    ||||| ||||||| || ||| |||||||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  ||      
T  28186133 ttgaggttacttttataacagcatcatcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagat 28186037  T
Q  379 aacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgc 447  Q
    ||||||||||||||||| |||||||| || ||||||||||||| |  || |||||||||||||||||||    
T  28186036 aacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgc 28185968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 274 - 446
Target Start/End: Complemental strand, 11421206 - 11421038
Alignment:
Q  274 aatatttgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgac 373  Q
    |||||||| |||| ||||||||||| ||||||||||||||  | |||| ||||  |||||||||||||||||||||||||    |||||||||||||||     
T  11421206 aatatttgtgcttgctttcatgacagcatcatcatttagagcaactga-caaacagtgggaaagaagagagttcaacttct---aaatgaaaagggtgat 11421111  T
Q  374 aaggaaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctg 446  Q
       | |||||||||||||||||||||||||| || || |||||||||| |  |||||  ||||||||||||||    
T  11421110 gtcgtaacttaagaaaataaaactgatccaaagagtcatcaccttgatcatcattagccttactagtttcctg 11421038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 279 - 447
Target Start/End: Complemental strand, 28150181 - 28150016
Alignment:
Q  279 ttgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagga 378  Q
    ||||| ||||||| | |||| |||| ||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  ||      
T  28150181 ttgaggttacttttacgacagcatcctcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagat 28150085  T
Q  379 aacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgc 447  Q
    ||||||||||||||||| |||||| | || ||||||||||||| |  ||||||||||||||||||||||    
T  28150084 aacttaagaaaataaaattgatcctaagactcttcaccttgatcatcattagtgttactagtttcctgc 28150016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 27458745 - 27458863
Alignment:
Q  251 tcatccttaggaaactcattctgaatatttgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaac 350  Q
    ||||| |||||||||| ||||| |||||||||||||||||| |||||| |||||||||||||| || |||||||||  || | ||||||||| ||| |||    
T  27458745 tcatcgttaggaaactgattctcaatatttgagcttacttttatgacagcatcatcatttagagaaactgaacaaaaagttgcaaagaagagggttaaac 27458844  T
Q  351 ttcatgaaaatgaaaagggtga 372  Q
    |||   ||||||||||||||||    
T  27458845 ttc---aaaatgaaaagggtga 27458863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 180 - 310
Target Start/End: Complemental strand, 11421532 - 11421402
Alignment:
Q  180 taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatt 279  Q
    ||||||||  ||| ||| ||||| ||||||||| |||| ||||| |||||||||||||||||||||| || |||||| |||||||||  | || | ||||    
T  11421532 taccttcaacaggttttaaaggatactgagatgcaatataagagggtcttgatttggaaactaatatatcatcatccgtaggaaactgttcctcagtatt 11421433  T
Q  280 tgagcttactttcatgacaacatcatcattt 310  Q
    ||| ||||||||| ||| | |||||||||||    
T  11421432 tgatcttactttcttgaaagcatcatcattt 11421402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 421
Target Start/End: Original strand, 28479791 - 28479930
Alignment:
Q  279 ttgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagga 378  Q
    ||||| ||||||| ||||||  ||||||||||| | || |||| |||| |||| || |||||||| || |||||||   ||||| |||||||||  |||     
T  28479791 ttgaggttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggt 28479887  T
Q  379 aacttaagaaaataaaactgatccaaggattcttcaccttgat 421  Q
    || |||||||||||||| |||||||| || |||||||||||||    
T  28479888 aaattaagaaaataaaattgatccaaagagtcttcaccttgat 28479930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 421
Target Start/End: Original strand, 28508974 - 28509113
Alignment:
Q  279 ttgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaagga 378  Q
    ||||| ||||||| ||||||  ||||||||||| | || |||| |||| |||| || |||||||| || |||||||   ||||| |||||||||  |||     
T  28508974 ttgaggttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggt 28509070  T
Q  379 aacttaagaaaataaaactgatccaaggattcttcaccttgat 421  Q
    || |||||||||||||| |||||||| || |||||||||||||    
T  28509071 aaattaagaaaataaaattgatccaaagagtcttcaccttgat 28509113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 449
Target Start/End: Complemental strand, 27920436 - 27920289
Alignment:
Q  301 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggaaa---cttaagaaaataaaact 397  Q
    ||||||||||||| || |||  |||| ||||||||||||||||||| ||||||   |||||||||| |||||  ||| ||   |||| ||||| || |||    
T  27920436 atcatcatttagagaaactgtccaaaaggtgggaaagaagagagttaaacttc---aaaatgaaaa-ggtgatgaggtaattgcttatgaaaacaacact 27920341  T
Q  398 gatccaaggattcttcaccttgattaatattagtgttactagtttcctgcca 449  Q
     |||||| || | ||||||||||| |  ||||||||||||||||||||||||    
T  27920340 aatccaaagagttttcaccttgatcatcattagtgttactagtttcctgcca 27920289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 27430814 - 27430870
Alignment:
Q  183 cttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaa 239  Q
    |||||| ||||||||||||| ||||||||| |||| ||||| |||||||||||||||    
T  27430814 cttcagcaggctttgaaggacactgagatgcaatataagagggtcttgatttggaaa 27430870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 27920518 - 27920463
Alignment:
Q  180 taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttg 235  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||  ||||||||||    
T  27920518 taccttcagaaggctttgaaggaaactgagatgcaatagaagaggttcttgatttg 27920463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 449
Target Start/End: Complemental strand, 27954483 - 27954374
Alignment:
Q  336 agaagagagttcaacttcatgaaaatgaaaagggtgacaaggaaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgtta 435  Q
    ||||||||||| |||||||   ||||||||||| |||  ||| |||||| ||||| || ||| |||||| || | ||||||||||| |  ||||||||||    
T  27954483 agaagagagttaaacttca---aaatgaaaagg-tgatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgtta 27954388  T
Q  436 ctagtttcctgcca 449  Q
    ||||||||||||||    
T  27954387 ctagtttcctgcca 27954374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 372
Target Start/End: Complemental strand, 28136532 - 28136448
Alignment:
Q  285 ttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtga 372  Q
    ||||||| |||||| |||||||||||| | || ||||||||| |||| || ||||||||||| || |||   ||||||||||||||||    
T  28136532 ttacttttatgacagcatcatcatttacagaaactgaacaaatggtgtgagagaagagagttaaagttc---aaaatgaaaagggtga 28136448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 26139099 - 26139182
Alignment:
Q  230 gatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatgacaacatcatcatttaga 313  Q
    ||||| ||||||| ||| || |||||| |||||||||  | || ||||||||||||||||||| ||| |  |||||||||||||    
T  26139099 gatttagaaactattatatcatcatccataggaaactgttcctcaatatttgagcttactttcttgaaagaatcatcatttaga 26139182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 447
Target Start/End: Complemental strand, 27776634 - 27776571
Alignment:
Q  384 aagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgc 447  Q
    |||||||||||| |||||||| || | ||||||||||| |  |||||| |||||||||||||||    
T  27776634 aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgc 27776571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 19185131 - 19185073
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatcttatgcaaccaaacacaaa 87  Q
    ||||||||||||||| |||||||||||| |||| |||||| ||| | ||||||| ||||    
T  19185131 cgacatcccaactaggttggcaccccgaagaactcccatcctataccaccaaactcaaa 19185073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 27310739 - 27310792
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaaccccca 66  Q
    ||||||||| || || ||||| ||||||||| ||||||||| ||||||||||||    
T  27310739 catcaaggggaagcaacgacaacccaactaggttggcaccctgatgaaccccca 27310792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 20952443 - 20952399
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatcttatg 73  Q
    ||||||||||||||| |||||||||||  ||||||||||| ||||    
T  20952443 cgacatcccaactaggttggcaccccgcagaacccccatcctatg 20952399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 26127292 - 26127408
Alignment:
Q  230 gatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatgacaacatcatcatttagaaaagctgaacaaaggg 329  Q
    ||||||||||||| ||| |  ||||||||| |||| |  | || ||||||||||||||||||| ||| |  ||||| ||||||| || ||||||||   |    
T  26127292 gatttggaaactattatattatcatccttatgaaattgttcctcaatatttgagcttactttcttgaaagaatcatgatttagagaacctgaacaacatg 26127391  T
Q  330 tgggaaagaagagagtt 346  Q
    ||| |||||| ||||||    
T  26127392 tggaaaagaatagagtt 26127408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 28162881 - 28162801
Alignment:
Q  230 gatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatgacaacatcatcattt 310  Q
    ||||||||||||| ||| || |||  ||||||||| |  | || ||||||||||||||||||| ||| | |||||||||||    
T  28162881 gatttggaaactattatatcatcaatcttaggaaattgttcctcaatatttgagcttactttcttgaaagcatcatcattt 28162801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 180 - 449
Target Start/End: Complemental strand, 8021143 - 8020879
Alignment:
Q  180 taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatt 279  Q
    |||||| || || |||||||||| ||||||||  |||| ||||| ||||||||||||||||||||||||| || ||||| |||||||  | || ||||||    
T  8021143 taccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatt 8021044  T
Q  280 tgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggaa 379  Q
    ||| ||||||||||||||| | |||||||||||| || ||| | ||| |||||||||||||| || | ||||||   ||||||||||||| ||  ||  |    
T  8021043 tgatcttactttcatgacatcgtcatcatttagagaaactg-agaaaaggtgggaaagaaga-aggttaacttc---aaaatgaaaagggcgatgagata 8020949  T
Q  380 acttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgcca 449  Q
    ||||||||||| ||||| ||||||| |||||||||||| |||    ||||||||||||||||||||||||    
T  8020948 acttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgcca 8020879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 16109973 - 16110014
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatctt 70  Q
    ||||||||||||||| |||||||||| |||||| ||||||||    
T  16109973 cgacatcccaactaggttggcaccccaatgaactcccatctt 16110014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 20374124 - 20374185
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    ||||||||| || || ||||||||||||||| ||| |||||||  ||||||||||| |||||    
T  20374124 catcaaggggaagcaacgacatcccaactaggttgccaccccgcagaacccccatcctatgc 20374185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 3914268 - 3914300
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaac 61  Q
    ||||||||||||||| |||||||||||||||||    
T  3914268 cgacatcccaactaggttggcaccccgatgaac 3914300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 22393563 - 22393515
Alignment:
Q  383 taagaaaataaaactgatccaaggattcttcaccttgattaatattagt 431  Q
    ||||||||||||| ||||||||  | |||||||||||||| ||||||||    
T  22393563 taagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt 22393515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 396
Target Start/End: Complemental strand, 2051 - 1840
Alignment:
Q  180 taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatt 279  Q
    |||||| || ||||||||||||| ||||||||  ||||  | ||||  |||||||||||||||||||||| ||||||||| |||| | || || |||||     
T  2051 taccttgagcaggctttgaaggacactgagatacaatagtacagagctttgatttggaaactaatatttcatcatccttaagaaattgatcctcaatatc 1952  T
Q  280 tgagcttactttcatgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggaa 379  Q
    ||||||||||||||||| | |||||||||||| |||| |||||||||  |||||||| |  |||||  ||||||   ||||||||||||||||   || |    
T  1951 tgagcttactttcatgatagcatcatcatttaaaaaaactgaacaaaatgtgggaaata--agagtcaaacttc---aaaatgaaaagggtgatgtggta 1857  T
Q  380 acttaagaaaataaaac 396  Q
    |||||||||||||||||    
T  1856 acttaagaaaataaaac 1840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 19277 - 19126
Alignment:
Q  293 atgacaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggaaacttaagaaaata 392  Q
    |||||||| || ||||||||| || ||||||||| |||| || ||||||||||| || ||||   |||||||||||||||  ||| ||||||||||||||    
T  19277 atgacaacgtcgtcatttagagaaactgaacaaaaggtgtgagagaagagagttaaatttca---aaatgaaaagggtgatgaggtaacttaagaaaata 19181  T
Q  393 aaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgc 447  Q
    | | |||||||| || ||||||||||||| |  | || |||||||||||||||||    
T  19180 atattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgc 19126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 621 - 538
Alignment:
Q  230 gatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttcatgacaacatcatcatttaga 313  Q
    |||| ||||| || |||||| ||||||||||||||||  | || ||||||| |||||||||||||||||||||| |||||||||    
T  621 gattgggaaattattatttcatcatccttaggaaactgttcctcaatatttaagcttactttcatgacaacatcgtcatttaga 538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 39117220 - 39117275
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatc 68  Q
    ||||||||| || || | ||||||||||||||||| ||||||||||||||||||||    
T  39117220 catcaaggggaagcaacaacatcccaactagattgacaccccgatgaacccccatc 39117275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 21079887 - 21079848
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatc 68  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  21079887 cgacatcccaactaggttggcaccccgatgaagccccatc 21079848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 34657920 - 34657962
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccg 55  Q
    ||||||| | ||||||||||||||||||||| |||||||||||    
T  34657920 catcaagaggaaacaccgacatcccaactaggttggcaccccg 34657962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 33040582 - 33040642
Alignment:
Q  14 atcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    |||||| || |||| ||||||||||||||| ||||||||||||  |||| ||||| |||||    
T  33040582 atcaagagacaacatcgacatcccaactaggttggcaccccgagaaacctccatcatatgc 33040642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 131446 - 131500
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccat 67  Q
    ||||| ||||||||| |||||| |||||||| |||||| ||||||||||||||||    
T  131446 catcatgggaaaacaacgacataccaactaggttggcaacccgatgaacccccat 131500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 14887 - 14826
Alignment:
Q  7 ggacatcatcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatc 68  Q
    ||||| ||||||||  || || ||||||||||||||| ||||||||||||||||| ||||||    
T  14887 ggacagcatcaaggagaagcaacgacatcccaactaggttggcaccccgatgaactcccatc 14826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 37375064 - 37375019
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||    
T  37375064 cgacatcccaactaggttggcaccccgaggaacccccatcctatgc 37375019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 38993120 - 38993165
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||||    
T  38993120 cgacatcccaactaggttggcaccccgcagaacccccatcctatgc 38993165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 2040098 - 2040134
Alignment:
Q  26 caccgacatcccaactagattggcaccccgatgaacc 62  Q
    |||||||||||||||||| |||||| |||||||||||    
T  2040098 caccgacatcccaactaggttggcatcccgatgaacc 2040134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 22602038 - 22602099
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    ||||||||| || || ||||||||||||||| |||||||||||  ||||||||||| |||||    
T  22602038 catcaaggggaatcaacgacatcccaactaggttggcaccccgcagaacccccatcctatgc 22602099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 28637673 - 28637628
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||    
T  28637673 cgacatcccaactaggttggcaccccgaggaacccccatcctatgc 28637628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 16987867 - 16987828
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatc 68  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  16987867 cgacatcccaactaggttggcaccccgatgaactcccatc 16987828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 2259404 - 2259478
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatcttatgcaaccaaacacaaa 87  Q
    ||||||| | ||||||||||||||||||||| |||||| ||||   |||| ||||| |||||| |||||| ||||    
T  2259404 catcaagaggaaacaccgacatcccaactaggttggcatcccgggaaacctccatcctatgcagccaaactcaaa 2259478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 21027039 - 21027084
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||||    
T  21027039 cgacatcccaactaggttggcaccccgcagaacccccatcctatgc 21027084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 17764971 - 17764939
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaac 61  Q
    ||||||||||| |||||||||||||||||||||    
T  17764971 cgacatcccaattagattggcaccccgatgaac 17764939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 21487859 - 21487904
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||    
T  21487859 cgacatcccaactaggttggcaccccgaagaacccccatcctatgc 21487904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 19054383 - 19054447
Alignment:
Q  5 atggacat-catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatc 68  Q
    |||||||| ||||||| | ||||||||||||||||||||| |||||||||||  ||||| |||||    
T  19054383 atggacatgcatcaagaggaaacaccgacatcccaactaggttggcaccccggggaacctccatc 19054447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 18332716 - 18332783
Alignment:
Q  21 gaaaacaccgacatcccaactagattggcaccccgatgaacccccatcttatgcaaccaaacacaaaa 88  Q
    ||||||| ||||||||||||||| |||||||||||  ||||| ||||| |||||  |||||| |||||    
T  18332716 gaaaacatcgacatcccaactaggttggcaccccggagaacctccatcctatgccgccaaactcaaaa 18332783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 33064827 - 33064882
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatc 68  Q
    ||||||||| || || ||||||||||||||| |||||||||||  |||||||||||    
T  33064827 catcaaggggaagcaacgacatcccaactaggttggcaccccgcagaacccccatc 33064882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 10423819 - 10423869
Alignment:
Q  24 aacaccgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    |||| ||||||||||||||| ||||||||||||  |||| |||||||||||    
T  10423819 aacatcgacatcccaactaggttggcaccccgagaaacctccatcttatgc 10423869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 12629264 - 12629298
Alignment:
Q  21 gaaaacaccgacatcccaactagattggcaccccg 55  Q
    |||||||||||||||||||||||||||||| ||||    
T  12629264 gaaaacaccgacatcccaactagattggcatcccg 12629298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 18036823 - 18036878
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatc 68  Q
    ||||||| | ||||||||||||||||||||  |||||||||||| ||||| |||||    
T  18036823 catcaagaggaaacaccgacatcccaactatgttggcaccccgaggaacctccatc 18036878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 29187918 - 29187863
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatc 68  Q
    ||||||||| ||||| | ||||||||| ||| |||| |||||||||||||||||||    
T  29187918 catcaaggggaaacatcaacatcccaagtaggttggaaccccgatgaacccccatc 29187863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 7242898 - 7242936
Alignment:
Q  29 cgacatcccaactagattggcaccccgatgaacccccat 67  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  7242898 cgacatcccaactaggttggcaccccgaggaacccccat 7242936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 24617740 - 24617782
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccg 55  Q
    ||||||| | ||||||||||||||||||||| |||||||||||    
T  24617740 catcaagaggaaacaccgacatcccaactaggttggcaccccg 24617782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 8511113 - 8511076
Alignment:
Q  113 aaaatatgtacaagaggggggactataccaaaactctc 150  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  8511113 aaaatatatacaagaggggggactagaccaaaactctc 8511076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 13580163 - 13580224
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatcttatgc 74  Q
    |||||||||||| || ||||||||| | ||| |||||||||||  ||||||||||| |||||    
T  13580163 catcaagggaaagcaacgacatccccattaggttggcaccccgtagaacccccatcctatgc 13580224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 8511202 - 8511146
Alignment:
Q  17 aagggaaaacaccgacatcccaactagattggcaccccgatgaacccccatcttatg 73  Q
    |||||||| || |||||| |||||||| ||||| ||| |||||||||||||| ||||    
T  8511202 aagggaaagcaacgacattccaactaggttggctcccagatgaacccccatcctatg 8511146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 13570525 - 13570493
Alignment:
Q  24 aacaccgacatcccaactagattggcaccccga 56  Q
    |||||| ||||||||||||||||||||||||||    
T  13570525 aacacctacatcccaactagattggcaccccga 13570493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 824 - 792
Alignment:
Q  24 aacaccgacatcccaactagattggcaccccga 56  Q
    |||||||||||||||||||| ||||||||||||    
T  824 aacaccgacatcccaactaggttggcaccccga 792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 52833 - 52881
Alignment:
Q  383 taagaaaataaaactgatccaaggattcttcaccttgattaatattagt 431  Q
    ||||||||||||| ||||||||  | |||||||||||||| ||||||||    
T  52833 taagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt 52881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University