View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14712_high_6 (Length: 458)
Name: NF14712_high_6
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14712_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 34321232 - 34321605
Alignment:
| Q |
20 |
tacatgactaagtttgagcatgaagttgagcttcttcgacatgcctctttgaatccaagcaattttgaacacgatgactatgtgttctcttcgcaagctc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34321232 |
tacatgactaagtttgagcatgaagttgagcttcttcgacatgcctctttgaatccaagcaatgttggacacgatgactatgtgttctcttcgcaagctc |
34321331 |
T |
|
| Q |
120 |
tctcaattccttcttagcagatttggatctatgtgtatgatttgtgggtttggattaaagattctcaataagtgttgaaagagacttgtttatttaagtt |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34321332 |
tctcaattccttcttagcatatttggatctatgtgtatgatttgtgggtttggattaaagattctcaataagtgttgaaagagacttgtttatttaagtt |
34321431 |
T |
|
| Q |
220 |
attaattacattttaatcnnnnnnnnnnctcttttgtacttgtaatctgttcattttagttaatttactattgtttactttctctaaatctggctgttat |
319 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34321432 |
attaattacattttaatcatttttctttctcttttgcacttgtaatctgttcattttagttaatttactattgtttactttctctaaatctggctgttat |
34321531 |
T |
|
| Q |
320 |
atctacattaagggtattgcatttgtggattcagtaatgattagtgtttatcttgtgaatgaaaaaattgcaat |
393 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34321532 |
atctacattaagggtattgcaattgtggattcagtaatgattagtgtttatcttgtgaatgaaaaaattgcaat |
34321605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 34330143 - 34330223
Alignment:
| Q |
23 |
atgactaagtttgagcatgaagttgagcttcttcgacatgcctctttgaatccaagcaattttgaacacgatgactatgtg |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | |||||||| | ||||||| |||| || |||| ||||| |||||| |
|
|
| T |
34330143 |
atgactaagtttgagcatgaagtgaagcttcttcaatatgcctctcttaatccaaccaatgtttaacatgatgagtatgtg |
34330223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University