View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14712_low_11 (Length: 377)
Name: NF14712_low_11
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14712_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 6820475 - 6820115
Alignment:
| Q |
1 |
atttatttaccaaataattagattacttatttaatttaccctttagagtgagttaatccttacacattctttttacttccgacaagcttacttcaacaca |
100 |
Q |
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| T |
6820475 |
atttatttaccaaatatttagattacttatttaatttaccctttagagtgagttaatccttacacattctttttacttccgacaagcttacttcaacaca |
6820376 |
T |
|
| Q |
101 |
ttcttttgtgaatatggaaacaataaaataatatgcaaagtgactagttttctctctatatatgagtactaattaagctcttcaatcacaaaacttgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6820375 |
ttcttttgtgaatatggaaacaataaaataatatgcaaagtgactagttttctctctatatatgagaactaattaagctcttcaatcacaaaacttgcta |
6820276 |
T |
|
| Q |
201 |
ggcatatatatcattaatacattcatcttgaaaagnnnnnnnnt--agagaggttggctagctcttaaaatggctgaaattgagtttgaaagtttgttta |
298 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6820275 |
ggcatatatatcattaatacattcatcttgaaaagaaaaaaaatagagagaggttggctagctcttaaaatggctgaaattgagtttgaaagtttgttta |
6820176 |
T |
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| Q |
299 |
atcatgcaatgagagggcaatggagagaagttttagagtcatatgagaaaacccctgaagt |
359 |
Q |
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| T |
6820175 |
atcatgcaatgagagggcaatggagagaagttttagagtcatatgagaaaacccctgaagt |
6820115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 6834700 - 6834591
Alignment:
| Q |
250 |
ggttggctagctcttaaaatggctgaaattgagtttgaaagtttgtttaatcatgcaatgagagggcaatggagagaagttttagagtcatatgagaaaa |
349 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6834700 |
ggttagctagctcttaaaatggctgaagttgagtttgaaagtttgtttaatcatgccatgagagggcaatggagagaagttttagagtcatatgagcaaa |
6834601 |
T |
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| Q |
350 |
cccctgaagt |
359 |
Q |
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||||||||| |
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| T |
6834600 |
accctgaagt |
6834591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 6834931 - 6834766
Alignment:
| Q |
1 |
atttatttaccaaataattagattacttatttaatttaccctttagagtgagtt-aatccttacacattctttttacttccgacaagcttacttcaacac |
99 |
Q |
| |
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|||||||| |||||| ||| ||||||||||| ||||||||| ||||| || |||||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
6834931 |
atttatttgtcaaatacttatattacttattt----taccctttaaagtgaatttaatccttacatattctttttacttcctccaagtttacttcaacat |
6834836 |
T |
|
| Q |
100 |
attcttttgtgaatatggaaacaataaaataatatgcaaagtgactagttttctctctatatatgagtacta |
171 |
Q |
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|| ||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
6834835 |
atacttttgtgaat--ggaaacaataaaataataagcaaagtgactagttttgtctctatatataagtacta |
6834766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 6813668 - 6813559
Alignment:
| Q |
250 |
ggttggctagctcttaaaatggctgaaattgagtttgaaagtttgtttaatcatgcaatgagagggcaatggagagaagttttagagtcatatgagaaaa |
349 |
Q |
| |
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|||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||| |
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| T |
6813668 |
ggttagctagctcttaaaatggctgagattgaacttgaaagtttgtttaatcatgccattagagggcaatggagagaagttatagagtcatatgaaaaaa |
6813569 |
T |
|
| Q |
350 |
cccctgaagt |
359 |
Q |
| |
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|||| |||| |
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| T |
6813568 |
accctaaagt |
6813559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 6813881 - 6813788
Alignment:
| Q |
53 |
ttaatccttacacattctttttacttccgacaagcttacttcaacacattcttttgtgaatatggaaacaataaaataatatgcaaagtgacta |
146 |
Q |
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|||||||||||| | ||| |||||||| ||||||||| |||| ||| ||||||||||||||||||||| |||| ||| || |||||||| |
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| T |
6813881 |
ttaatccttacatacccttcttacttcctccaagcttacatcaaagcataaatttgtgaatatggaaacaatagaatagtattcatagtgacta |
6813788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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