View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14712_low_17 (Length: 266)
Name: NF14712_low_17
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14712_low_17 |
 | |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 9526538 - 9526288
Alignment:
| Q |
4 |
tgttgctgatataggtacagggctgttacaagtgcatactatagaggtgcattaggagccatgctagtatatgacataaccaaaagacaatcatttgatc |
103 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
9526538 |
tgttgttgatataggtacagagctgtaacaagtgcatactatagaggtgcattaggagcaatgctagtatatgacataaccaaaaggcaatcttttgatc |
9526439 |
T |
|
| Q |
104 |
atgttgctaaatgggttgaggaacttagagcacatgcagataactcaattgtgatcatgctagttggtaacaaaggtgaccttgttgacttgagaatggt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9526438 |
atgttgctaaatgggttgaggaacttagagcacatgcagataactcaattgtgatcatgctagttggtaacaaaggtgaccttgttgatttgagaatggt |
9526339 |
T |
|
| Q |
204 |
tcctactgaagatgcagttgagtttgcagaagaccaaggtttattcttctc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9526338 |
ccctactgaagatgcagttgagtttgcagaagaccaaggtttattcttctc |
9526288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 48932172 - 48932348
Alignment:
| Q |
12 |
atataggtacagggctgttacaagtgcatactatagaggtgcattaggagccatgctagtatatgacataaccaaaagacaatcatttgatcatgttgct |
111 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||| ||||||||| | ||||||||||| ||| |
|
|
| T |
48932172 |
atataggtacagagcggttacaagtgcatactacagaggagcattaggggccatgctggtgtatgacataactaaaagacaaacgtttgatcatgtagct |
48932271 |
T |
|
| Q |
112 |
aaatgggttgaggaacttagagcacatgcagataactcaattgtgatcatgctagttggtaacaaaggtgaccttgt |
188 |
Q |
| |
|
| |||| |||||||||| | |||| || || ||||| || |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
48932272 |
agatggattgaggaactacggtcacacgccgacaactccatcgtgatcatgctaattggtaacaaaggtgatcttgt |
48932348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 14388 - 14479
Alignment:
| Q |
13 |
tataggtacagggctgttacaagtgcatactatagaggtgcattaggagccatgctagtatatgacataaccaaaagacaatcatttgatca |
104 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||||| | || || ||| |||| || ||||| || ||| | |||||||| ||||| |
|
|
| T |
14388 |
tataggtacagggcagttactagtgcatactatcgaggtgcagttggggcaatgttagtttacgacatgacaaaacgtcaatcattcgatca |
14479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University