View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14712_low_21 (Length: 253)

Name: NF14712_low_21
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14712_low_21
NF14712_low_21
[»] scaffold0312 (1 HSPs)
scaffold0312 (9-253)||(11349-11594)
[»] chr1 (11 HSPs)
chr1 (9-253)||(418977-419222)
chr1 (9-200)||(975834-976025)
chr1 (200-247)||(10909246-10909293)
chr1 (201-247)||(29834000-29834046)
chr1 (200-244)||(734578-734622)
chr1 (200-247)||(13011835-13011882)
chr1 (201-247)||(2403835-2403881)
chr1 (201-247)||(8933549-8933595)
chr1 (201-247)||(10911489-10911535)
chr1 (201-247)||(29833076-29833122)
chr1 (200-241)||(2409956-2409997)
[»] chr8 (5 HSPs)
chr8 (199-247)||(4879458-4879506)
chr8 (200-247)||(4877130-4877177)
chr8 (200-247)||(36379464-36379511)
chr8 (201-247)||(24519153-24519199)
chr8 (201-247)||(21268120-21268166)
[»] chr7 (10 HSPs)
chr7 (200-247)||(3932853-3932900)
chr7 (200-247)||(19789226-19789273)
chr7 (201-247)||(3935092-3935138)
chr7 (199-247)||(16496951-16496999)
chr7 (203-247)||(19786920-19786964)
chr7 (199-247)||(42678569-42678617)
chr7 (201-247)||(8414490-8414536)
chr7 (201-247)||(8731176-8731222)
chr7 (201-247)||(18395451-18395497)
chr7 (201-247)||(36464213-36464259)
[»] chr5 (3 HSPs)
chr5 (200-247)||(11852174-11852221)
chr5 (201-247)||(11849917-11849963)
chr5 (201-247)||(23164254-23164300)
[»] chr4 (6 HSPs)
chr4 (200-247)||(13774290-13774337)
chr4 (200-247)||(42470767-42470814)
chr4 (200-247)||(45162318-45162365)
chr4 (201-247)||(42468439-42468485)
chr4 (201-247)||(50855771-50855817)
chr4 (204-247)||(13776587-13776630)
[»] chr3 (2 HSPs)
chr3 (200-247)||(4530974-4531021)
chr3 (201-247)||(4533271-4533317)
[»] chr2 (5 HSPs)
chr2 (200-247)||(31487023-31487070)
chr2 (200-247)||(42277781-42277828)
chr2 (201-247)||(5164151-5164197)
chr2 (201-247)||(42275556-42275602)
chr2 (201-247)||(31489307-31489353)
[»] scaffold0599 (1 HSPs)
scaffold0599 (201-247)||(1755-1801)
[»] scaffold1361 (1 HSPs)
scaffold1361 (200-244)||(97-141)
[»] scaffold0050 (1 HSPs)
scaffold0050 (200-247)||(29468-29515)
[»] scaffold0008 (1 HSPs)
scaffold0008 (200-247)||(88485-88532)


Alignment Details
Target: scaffold0312 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 11594 - 11349
Alignment:
Q  9 tgagatgaaattggttaatataaaataaaacaagcttaactataatgaagaagtgaaaatattaaagttcaatatgaaaatcattgattttcacccaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11594 tgagatgaaattggttaatataaaataaaacaagcttaactataatgaagaagtgaaaatattaaagttcaatatgaaaatcactgattttcacccaaat 11495  T
Q  109 gaaa-agcttcactatatcataaattaacacacatgtaatacatcatagcaaatatatcttacctaaaactgtaaaagtaaaacaaatagcactggctca 207  Q
    ||   |  ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11494 gactgattttcaccatatcataaattaagacacatgtaatacatcatagcaaatatatcttacctaaaactgtaaaagtaaaacaaatagcactggttca 11395  T
Q  208 gagacaaaaggaatggtagaggaaatagagaaacactctattagct 253  Q
    |||||||||| |||||||||| |||||||||||||||||| |||||    
T  11394 gagacaaaagaaatggtagagaaaatagagaaacactctagtagct 11349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 418977 - 419222
Alignment:
Q  9 tgagatgaaattggttaatataaaataaaacaagcttaactataatgaagaagtgaaaatattaaagttcaatatgaaaatcattgattttcacccaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  418977 tgagatgaaattggttaatataaaataaaacaagcttaactataatgaagaagtgaaaatattaaagttcaatatgaaaatcactgattttcacccaaat 419076  T
Q  109 gaaa-agcttcactatatcataaattaacacacatgtaatacatcatagcaaatatatcttacctaaaactgtaaaagtaaaacaaatagcactggctca 207  Q
    ||   |  ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  419077 gactgattttcaccatatcataaattaagacacatgtaatacatcatagcaaatatatcttacctaaaactgtaaaagtaaaacaaatagcactggttca 419176  T
Q  208 gagacaaaaggaatggtagaggaaatagagaaacactctattagct 253  Q
    |||||||||| |||||||||| |||||||||||||||||| |||||    
T  419177 gagacaaaagaaatggtagagaaaatagagaaacactctagtagct 419222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 976025 - 975834
Alignment:
Q  9 tgagatgaaattggttaatataaaataaaacaagcttaactataatgaagaagtgaaaatattaaagttcaatatgaaaatcattgattttcacccaaat 108  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  976025 tgagatgaaattggttaatataaaatgaaataagcttaactataatgaagaagtgaaaatattaaagttcaatatgaaaatcactgattttcacccaaat 975926  T
Q  109 gaaaagcttcactatatcataaattaacacacatgtaatacatcatagcaaatatatcttacctaaaactgtaaaagtaaaacaaatagcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975925 gaaaagcttcactatatcataaattaacacacatgtaatacatcatagcaaatatatcttacctaaaactgtaaaagtaaaacaaatagcac 975834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 10909293 - 10909246
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  10909293 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 10909246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 29834046 - 29834000
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  29834046 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 29834000  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 734578 - 734622
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacact 244  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||    
T  734578 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacact 734622  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 13011882 - 13011835
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||||  |||||||||| ||||||| ||||||||||||||||||    
T  13011882 ctggctcaggaacaaaaggaaaggtagagaaaatagagaaacactcta 13011835  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 2403835 - 2403881
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| |||||||||||| |||||    
T  2403835 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctcta 2403881  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 8933549 - 8933595
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| |||||||| || ||||||| ||||||||||||||||||    
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactcta 8933595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 10911535 - 10911489
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||  ||||||||||||||||||    
T  10911535 tggctcagggacaaaaggaaaggtagataaaatagagaaacactcta 10911489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 29833076 - 29833122
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||| | ||||||| ||||||||||||||||||    
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactcta 29833122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 2409956 - 2409997
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaac 241  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||    
T  2409956 ctggctcagggacaaaaggaaaggtagagaaaatagagaaac 2409997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 4879506 - 4879458
Alignment:
Q  199 actggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  4879506 actggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 4879458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 4877177 - 4877130
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  4877177 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 4877130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 36379464 - 36379511
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  36379464 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 36379511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 24519153 - 24519199
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  24519153 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 24519199  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 21268120 - 21268166
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| |||||||| || ||||||| ||||||||||||||||||    
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactcta 21268166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 3932900 - 3932853
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  3932900 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 3932853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 19789273 - 19789226
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  19789273 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 19789226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 3935138 - 3935092
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  3935138 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 3935092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 16496951 - 16496999
Alignment:
Q  199 actggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||||| ||||||||| | ||||||| ||||||||||||||||||    
T  16496951 actggctcagggacaaaagggaaggtagagaaaatagagaaacactcta 16496999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 19786964 - 19786920
Alignment:
Q  203 gctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 19786920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 42678569 - 42678617
Alignment:
Q  199 actggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||||| ||||||||||| ||||||| ||||| ||||||||||||    
T  42678569 actggctcagggacaaaaggaaaggtagagaaaataaagaaacactcta 42678617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 8414490 - 8414536
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||| ||||||||||    
T  8414490 tggctcagggacaaaaggaaaggtagagaaaatagaaaaacactcta 8414536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 8731176 - 8731222
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||  ||||||||||||||||||    
T  8731176 tggctcagggacaaaaggaaaggtagataaaatagagaaacactcta 8731222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 18395497 - 18395451
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||| || ||||||||||| ||||||| ||||||||||||||||||    
T  18395497 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactcta 18395451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 36464213 - 36464259
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| |||| |||||||||||||    
T  36464213 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactcta 36464259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 11852174 - 11852221
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  11852174 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 11852221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 11849917 - 11849963
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  11849917 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 11849963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 23164254 - 23164300
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||| | ||||||| ||||||||||||||||||    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactcta 23164300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 13774337 - 13774290
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  13774337 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 13774290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 42470767 - 42470814
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  42470767 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 42470814  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 45162365 - 45162318
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  45162365 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 45162318  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 42468439 - 42468485
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  42468439 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 42468485  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 50855771 - 50855817
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 50855817  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 13776630 - 13776587
Alignment:
Q  204 ctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 13776587  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 4531021 - 4530974
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  4531021 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 4530974  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 4533317 - 4533271
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  4533317 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 4533271  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 31487070 - 31487023
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  31487070 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 31487023  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 42277781 - 42277828
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  42277781 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 42277828  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 5164151 - 5164197
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 5164197  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 42275556 - 42275602
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 42275602  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 31489353 - 31489307
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||| || ||||||||||| ||||||| ||||||||||||||||||    
T  31489353 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactcta 31489307  T

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Target: scaffold0599 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 1801 - 1755
Alignment:
Q  201 tggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactcta 1755  T

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Target: scaffold1361 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 141 - 97
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacact 244  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||    
T  141 ctggctcagggacaaaaggaaaggtagagaaaatagagaaacact 97  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 29515 - 29468
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| |||||||||||| |||||    
T  29515 ctggctcagggacaaaaggaaaggtagagaaaatagagaaactctcta 29468  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 88532 - 88485
Alignment:
Q  200 ctggctcagagacaaaaggaatggtagaggaaatagagaaacactcta 247  Q
    ||||||||| ||||||||||| ||||||| ||||||||||| ||||||    
T  88532 ctggctcagggacaaaaggaaaggtagagaaaatagagaaagactcta 88485  T

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