View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14712_low_23 (Length: 249)

Name: NF14712_low_23
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14712_low_23
NF14712_low_23
[»] chr8 (6 HSPs)
chr8 (18-231)||(454260-454473)
chr8 (28-165)||(10685610-10685748)
chr8 (28-165)||(35743992-35744130)
chr8 (28-165)||(18867016-18867154)
chr8 (28-209)||(26299909-26300091)
chr8 (28-165)||(18856621-18856759)
[»] chr5 (9 HSPs)
chr5 (28-209)||(28836851-28837033)
chr5 (28-209)||(37557970-37558152)
chr5 (28-165)||(31398338-31398476)
chr5 (28-120)||(33789964-33790056)
chr5 (28-209)||(24556930-24557112)
chr5 (28-209)||(24597962-24598144)
chr5 (28-165)||(27448425-27448563)
chr5 (80-157)||(43595732-43595810)
chr5 (80-157)||(43628526-43628604)
[»] chr7 (8 HSPs)
chr7 (28-165)||(16883530-16883668)
chr7 (28-165)||(24262669-24262807)
chr7 (26-209)||(49090247-49090431)
chr7 (28-209)||(18412217-18412399)
chr7 (28-165)||(21644640-21644778)
chr7 (28-209)||(21987479-21987661)
chr7 (80-209)||(9186543-9186673)
chr7 (90-206)||(5818593-5818710)
[»] chr6 (5 HSPs)
chr6 (28-209)||(24432667-24432849)
chr6 (28-165)||(33332422-33332560)
chr6 (28-165)||(14738918-14739056)
chr6 (28-165)||(29485190-29485328)
chr6 (80-146)||(24077553-24077619)
[»] chr3 (8 HSPs)
chr3 (28-165)||(8515697-8515835)
chr3 (28-209)||(16262921-16263103)
chr3 (28-165)||(32478943-32479081)
chr3 (28-209)||(1309430-1309612)
chr3 (28-165)||(2673566-2673704)
chr3 (80-165)||(28490571-28490657)
chr3 (28-209)||(3324882-3325064)
chr3 (80-164)||(9603245-9603330)
[»] scaffold0197 (1 HSPs)
scaffold0197 (28-165)||(15655-15793)
[»] chr2 (2 HSPs)
chr2 (28-165)||(19347881-19348019)
chr2 (80-126)||(25394529-25394575)
[»] scaffold0006 (2 HSPs)
scaffold0006 (29-209)||(1067-1247)
scaffold0006 (80-209)||(9223-9352)
[»] chr1 (3 HSPs)
chr1 (28-165)||(41396842-41396980)
chr1 (18-209)||(47100154-47100346)
chr1 (27-231)||(9025143-9025348)
[»] chr4 (3 HSPs)
chr4 (28-165)||(9225750-9225888)
chr4 (80-165)||(16625391-16625477)
chr4 (71-132)||(5146541-5146602)
[»] scaffold0078 (1 HSPs)
scaffold0078 (80-165)||(35613-35699)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 454260 - 454473
Alignment:
Q  18 tttgatcactgtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgca 117  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  454260 tttgatcactgtgagttccttttaaggcatgtgacatatgatcctgaacctatgcaaaatgcaattcccattaacatgtttgataatctaagttattgca 454359  T
Q  118 ctaaaattgtgcatgagatgtgtaaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgta 217  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  454360 ctaaaattgtatatgagatgtgtaaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttattgta 454459  T
Q  218 attgatcatgtatc 231  Q
    ||||||||||||||    
T  454460 attgatcatgtatc 454473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 10685610 - 10685748
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | |||| ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  10685610 gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 10685709  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  10685710 gcatggggtttgtaaaatttcgcatggtgcattgattac 10685748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 35744130 - 35743992
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  35744130 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 35744031  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  35744030 gcatggggtttgtaaaatttcgcatggtgcattgattac 35743992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 18867016 - 18867154
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || ||  |||  ||||||| | ||||||||||||||||||||||||||||||| |||||     
T  18867016 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgataatctaggttattgcactagaattga 18867115  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  18867116 gcatggggtttgtaaaatttcgcatggtgcattgattac 18867154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 26300091 - 26299909
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || ||  |||  ||||||||| | ||||||||||| ||||||||||||||||| |||||     
T  26300091 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccataaccatgtttgatagtctaggttattgcactagaattga 26299992  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
     |||| | | ||| |||||||| |||||||||| |||||  ||||  | | ||| |||  || ||||||||||||||||||||    
T  26299991 acatggggtttgtaaaatttcgtatggtgcattgattacggttaaggggtctaaaatgaatggtttatacattttagatggtt 26299909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 18856621 - 18856759
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || ||  |||  ||||||| |  | |||||||||||||||||||||||||||| |||||     
T  18856621 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctatgtatgtttgataatctaggttattgcactagaattga 18856720  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||| | |||||||||| |||||    
T  18856721 gcatggggtttgtaaaattttgcatggtgcattgattac 18856759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 28837033 - 28836851
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||| | ||||| ||| || ||| |||| || || ||||  ||||||| | ||||||||||||| ||||||||||||||||| |||||     
T  28837033 gtgaattccttttaaaggatgtgagatttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattga 28836934  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||||| | ||| |||||||| |||||||||| |||||  ||||| | | ||| |||  || ||||||||||||||||||||    
T  28836933 gcatgaggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacattttagatggtt 28836851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 37557970 - 37558152
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  37557970 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 37558069  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||| | | ||| |||||||| |||||||||| |||||| ||||  | | ||  |||  || ||||||||||||||||||||    
T  37558070 gcatggggtttgtaaaatttcgcatggtgcattgattactattaaggggtctagaatgaatggtttatacattttagatggtt 37558152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 31398338 - 31398476
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | |||| ||| |||| || || ||||  ||||||||| |||||||||||||||||||||||||||| || ||| |     
T  31398338 gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcagtagaataga 31398437  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  31398438 gcatggggtttgtaaaatttcgcatggtgcattgattac 31398476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 33790056 - 33789964
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcacta 120  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||||| |||||||||||||||||||||||||||||||    
T  33790056 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcacta 33789964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 24556930 - 24557112
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||| | ||||| | | || ||| |||| || || ||||  ||||||| ||||||||||||||| | |||| |||||||||| |||||     
T  24556930 gtgaattccttttaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccttagcatgtttgatagtttaggatattgcactagaattga 24557029  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||| | | ||| |||||||| |||||||||| |||||  ||||| | | ||| |||  || ||||||||||| ||||||||    
T  24557030 gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacatttcagatggtt 24557112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 24597962 - 24598144
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||| | ||||| | | || ||| |||| || || ||||  ||||||| ||||||||||||||| | |||| |||||||||| |||||     
T  24597962 gtgaattccttttaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccttagcatgtttgatagtttaggatattgcactagaattga 24598061  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||| | | ||| |||||||| |||||||||| |||||  ||||| | | ||| |||  || ||||||||||| ||||||||    
T  24598062 gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacatttcagatggtt 24598144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 27448563 - 27448425
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || ||  |||  ||||||| | ||||||||||||||||||||||||||||||| ||| |     
T  27448563 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgataatctaggttattgcactagaataga 27448464  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  27448463 gcatggggtttgtaaaatttcgcatggtgcattgattac 27448425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 43595810 - 43595732
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgca 157  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||| | ||||| | | ||| |||||||| ||||||||    
T  43595810 aatttccctaagcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgca 43595732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 43628604 - 43628526
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgca 157  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||| | ||||| | | ||| |||||||| ||||||||    
T  43628604 aatttccctaagcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgca 43628526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 16883668 - 16883530
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | |||| ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  16883668 gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 16883569  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  16883568 gcatggggtttgtaaaatttcgcatggtgcattgattac 16883530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 24262669 - 24262807
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | |||| ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  24262669 gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 24262768  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  24262769 gcatggggtttgtaaaatttcgcatggtgcattgattac 24262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 49090431 - 49090247
Alignment:
Q  26 ctgtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaatt 125  Q
    ||||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||| | ||||||||||||| ||||||||||||||||| ||||    
T  49090431 ctgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccttaagcatgtttgatagtctaggttattgcactagaatt 49090332  T
Q  126 gtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
      ||||| | | ||| |||||||| |||||||||| |||||  ||||| | | ||| |||  || ||||||||||||||||||||    
T  49090331 aagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacattttagatggtt 49090247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 18412399 - 18412217
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||| | ||||||||||||  ||||||||||||||||| |||||     
T  18412399 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatggtctaggttattgcactagaattga 18412300  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||| | | ||| |||||||| |||||||||| |||||  ||||  | | ||| |||  || ||||||||||||||||||||    
T  18412299 gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtctaaaatgaatggtttatacattttagatggtt 18412217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 21644778 - 21644640
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||| | ||||||||||||| ||||||||||||||||| |||||     
T  21644778 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattga 21644679  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  21644678 gcatggggtttgtaaaatttcgcatggtgcattgattac 21644640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 21987661 - 21987479
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| ||  | ||||  ||||||| | || |||||||||| ||||||||||||||||| |||||     
T  21987661 gtgaattccttttaagggatgtgaggtttgttcccgaacttaaacgaaatttaatttccctaagaatgtttgatagtctaggttattgcactagaattga 21987562  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||| | | ||| |||||||| |||||||||| |||||  ||||| | | ||| |||  || ||||||||||||||||||||    
T  21987561 gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaaggatctaaaatgaatggtttatacattttagatggtt 21987479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 9186543 - 9186673
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgtttt 178  Q
    ||||||| | ||||||||||||| | ||||||||||||||| ||||| ||||| | | ||| |||||||| |||||||||| |||||  ||||| | | |    
T  9186543 aatttccctaagcatgtttgatagtataggttattgcactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtct 9186642  T
Q  179 aagatgtttgatttatacattttagatggtt 209  Q
    || |||  || ||||||||||||||||||||    
T  9186643 aaaatgaatggtttatacattttagatggtt 9186673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 5818593 - 5818710
Alignment:
Q  90 agcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttg 188  Q
    |||||||| |||| | ||||||||||||||||||||| |||||   | ||| |||||| | ||| |||||| |||||  ||||| | | |||||||  ||    
T  5818593 agcatgttagatagtataggttattgcactaaaattgagcatggagtttgtcaaattttgcatgatgcattcattacagttaaagggtctaagatgaatg 5818692  T
Q  189 atttatacattttagatg 206  Q
     |||||||||||||||||    
T  5818693 gtttatacattttagatg 5818710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 24432667 - 24432849
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||||| ||||| ||||||| |||||||||||| |||| |||||     
T  24432667 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatatttgatagtctaggttattgtactagaattga 24432766  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||| | | ||| |||||||| |||||||||| |||||  ||||| | | ||| ||| ||| ||||||||||||||||||||    
T  24432767 gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgattggtttatacattttagatggtt 24432849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 33332422 - 33332560
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  33332422 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 33332521  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  33332522 gcatggggtttgtaaaatttcgcatggtgcattgattac 33332560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 14738918 - 14739056
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || ||  |||  ||||||| | ||||||||||||||||||||||||||||||| ||| |     
T  14738918 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgataatctaggttattgcactagaataga 14739017  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  14739018 gcatggggtttgtaaaatttcgcatggtgcattgattac 14739056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 29485328 - 29485190
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||| | ||||||||| ||| ||||||||||||||||| |||||     
T  29485328 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttaatagtctaggttattgcactagaattga 29485229  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||||| | ||| |||||||| | |||||||| |||||    
T  29485228 gcatgaggtttgtaaaatttcgcagggtgcattgattac 29485190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 24077619 - 24077553
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgtaaattt 146  Q
    ||||||||| ||||||||||||| |||||||||||| ||||  |||| ||||||| | |||||||||    
T  24077619 aatttccataagcatgtttgatagtctaggttattgtactaggattgagcatgaggtttgtaaattt 24077553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 8515835 - 8515697
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | |||| ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  8515835 gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 8515736  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  8515735 gcatggggtttgtaaaatttcgcatggtgcattgattac 8515697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 16263103 - 16262921
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||| | ||||||||||||| ||||||||||||||||||||||      
T  16263103 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactaaaatttg 16263004  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||| | | ||| ||||||||||||||||||| || ||  ||||| | | ||| |||  || ||||||||||||||||||||    
T  16263003 gcatggggtttgtaaaatttcgaatggtgcattgataacgattaaagggtctaaaatgaatggtttatacattttagatggtt 16262921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 32479081 - 32478943
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | |||| ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  32479081 gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 32478982  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  32478981 gcatggggtttgtaaaatttcgcatggtgcattgattac 32478943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 1309612 - 1309430
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || ||  |||  ||||||| | |||||||||||||  |||||||||||||||| |||||     
T  1309612 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgatagcctaggttattgcactagaattga 1309513  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||| ||| ||| |||||||| |||||||||| |||||  ||||  | | ||| |||  || ||||||||||||||||||||    
T  1309512 gcatgggatttgtaaaatttcgcatggtgcattgattacggttaagggatctaaaatgaatggtttatacattttagatggtt 1309430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 2673566 - 2673704
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | |  ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  2673566 gtgaattccttttaagggatgtgaggttttttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 2673665  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  2673666 gcatggggtttgtaaaatttcgcatggtgcattgattac 2673704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 28490571 - 28490657
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||| | ||||| | | ||| |||||||| |||||||||| |||||    
T  28490571 aatttccctaagcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattac 28490657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 3324882 - 3325064
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||| | ||||| | | || ||| |||| || || ||||  ||||||| | ||||||||||||| | |||||||||| |||| |||||     
T  3324882 gtgaattccttttaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtataggttattgtactagaattga 3324981  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||||| | | ||| |||| ||  |||||||||| |||||  ||||| | | ||| |||  || ||||||||||||||||||||    
T  3324982 gcatggggtttgtaaaatctcacatggtgcattgattacggttaaagggtctaaaatgaatggtttatacattttagatggtt 3325064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 9603245 - 9603330
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaatta 164  Q
    ||||||| | ||||||||||||| ||||||||||||||||| ||||| ||||| | | ||| |||||||  |||||||||| ||||    
T  9603245 aatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatggggtttgtaaaatttcacatggtgcattgatta 9603330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 15655 - 15793
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  15655 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 15754  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  15755 gcatggggtttgtaaaatttcgcatggtgcattgattac 15793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 19348019 - 19347881
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||||| ||||||||||||||||||||||||||||||| ||| |     
T  19348019 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga 19347920  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  19347919 gcatggggtttgtaaaatttcgcatggtgcattgattac 19347881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 25394575 - 25394529
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattg 126  Q
    ||||||| | ||||||||||||| ||||||||||||||||| |||||    
T  25394575 aatttccctaagcatgtttgatagtctaggttattgcactagaattg 25394529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 1247 - 1067
Alignment:
Q  29 tgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgtg 128  Q
    |||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||| | ||||||||||||| ||||||||||||||||| ||||| |    
T  1247 tgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattgag 1148  T
Q  129 catgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    |||| | | ||| |||||||| |||||||||| |||||  ||||| | | ||| |||  || ||||||||||||||||||||    
T  1147 catgcggt-tgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacattttagatggtt 1067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 9352 - 9223
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgtttt 178  Q
    ||||||| | ||||||||||||| ||||||||||||||||| ||||| ||||| | | ||| |||||||| |||||||||| |||||  ||||| | | |    
T  9352 aatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatgcggt-tgtaaaatttcgcatggtgcattgattacggttaaagggtct 9254  T
Q  179 aagatgtttgatttatacattttagatggtt 209  Q
    || |||  || ||||||||||||||||||||    
T  9253 aaaatgaatggtttatacattttagatggtt 9223  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 41396980 - 41396842
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || || ||||  ||||||||| ||||||||||| ||||||||||||||||||| ||| |     
T  41396980 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgacaatctaggttattgcactagaataga 41396881  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  41396880 gcatggggtttgtaaaatttcgcatggtgcattgattac 41396842  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 47100154 - 47100346
Alignment:
Q  18 tttgatcactgtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgca 117  Q
    |||||| || |||||||||| |||| | ||||| | | || ||| |||| || || ||||  ||||||| | ||||||||||||| ||||||||||||||    
T  47100154 tttgatgaccgtgaattcctattaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgca 47100253  T
Q  118 ctaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt 209  Q
    ||| ||||| ||||| | | ||| |||||||| |||||| ||| |||||  ||||| | | ||| |||  || ||||||||||||||||||||    
T  47100254 ctagaattgagcatggggtttgtaaaatttcgcatggtgtattgattacgattaaagggtctaaaatgaatggtttatacattttagatggtt 47100346  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 9025143 - 9025348
Alignment:
Q  27 tgtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattg 126  Q
    |||||||||||| ||||| ||||| | | || ||| |||| ||||| ||||  ||||||| | | ||||||||||| ||||| |||||||| || |||||    
T  9025143 tgtgaattccttctaaggtatgtgaggtttgttcccgaacttatgcgaaatttaatttccctaaacatgtttgatagtctagattattgcattagaattg 9025242  T
Q  127 tgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatca 225  Q
       ||| | | | | |||||||| ||||||| ||||||||||||||| | | ||| |||  || |||||||||||||||||||| ||  ||||||| | |    
T  9025243 aatatggggtttatgaaatttcgcatggtgctttaattactcttaaagggtctaaaatgaatggtttatacattttagatggttctatagtaattggtaa 9025342  T
Q  226 tgtatc 231  Q
    ||||||    
T  9025343 tgtatc 9025348  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 9225750 - 9225888
Alignment:
Q  28 gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt 127  Q
    ||||||||||||||||| ||||| | | || ||| |||| || ||  |||  ||||||| | ||||||||||||||||||||||||||||||| ||| |     
T  9225750 gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgataatctaggttattgcactagaataga 9225849  T
Q  128 gcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||| | | ||| |||||||| |||||||||| |||||    
T  9225850 gcatggggtttgtaaaatttcgcatggtgcattgattac 9225888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 16625391 - 16625477
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgtaaa-tttcgaatggtgcattaattac 165  Q
    ||||||| | ||||||||||||| ||||||||||||||||| ||||| ||||||| | |||||| ||||| |||||||||| |||||    
T  16625391 aatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatgaggtttgtaaagtttcgcatggtgcattgattac 16625477  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 5146602 - 5146541
Alignment:
Q  71 gcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatg 132  Q
    |||||||  ||||||| | ||||||||||||| ||||||||||||||||| ||||| |||||    
T  5146602 gcaaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatg 5146541  T

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Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 35699 - 35613
Alignment:
Q  80 aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattac 165  Q
    ||||||||  ||||||||| |||  |||||||||||||||| ||||| ||||| | | ||| |||||| | ||||||||||||||||    
T  35699 aatttccagaagcatgttttataggctaggttattgcactataattgagcatggggtttgtaaaattttgcatggtgcattaattac 35613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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