View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14712_low_26 (Length: 239)
Name: NF14712_low_26
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14712_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 48707934 - 48708061
Alignment:
| Q |
1 |
aaggttgccacaaattgttttccttcacatgagagtgtacattctgaatggataagtattcgagattgtttatattattactaaatgtttttaatgtgtc |
100 |
Q |
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| T |
48707934 |
aaggttgccacaaattgttttccttcac--gagagtgtacattctgaatggataagtattcgagattgtttatattattactaaatgtttttaatgtgtc |
48708031 |
T |
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| Q |
101 |
ccttttaggagtaattttcaagtttcattg |
130 |
Q |
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| T |
48708032 |
ccttttaggagtaattttcaagtttcattg |
48708061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 48708086 - 48708183
Alignment:
| Q |
126 |
cattgtatcctagaagataatcattaatggatgtatgataggtttaatttgtttatggaagctctgaagcattcttttataaagtaaaagggaaaagt |
223 |
Q |
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| T |
48708086 |
cattgtatcctagaagatgatcattaatggatgtatgataggtttaatttgtttatggaagctctgaagcattcttttataaagtaaaagggaaaagt |
48708183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 12957950 - 12958040
Alignment:
| Q |
127 |
attgtatcctagaagataatcattaatggatgtatgataggtttaatttgtttatggaagctctgaagcattcttttataaagtaaaagggaaa |
220 |
Q |
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| T |
12957950 |
attgtatcctagaagatgatctttga---atgtatgataggttcaatttgtttttggaagctctgaagcattcttttttaaagtaaaagggaaa |
12958040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 14391865 - 14391931
Alignment:
| Q |
11 |
caaattgttttccttcacatgagagtgtacattctga-atggataagtattcgagattgtttatatt |
76 |
Q |
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| T |
14391865 |
caaattgttttcctgcacatgaaagtgtacattctgagttgggtaagtatttgagagtgtttatatt |
14391931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 16021703 - 16021641
Alignment:
| Q |
11 |
caaattgttttccttcacatgagagtgtacattctga-atggataagtattcgagattgttta |
72 |
Q |
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||||||||||||||||| ||| |||||||||||||| ||| ||||| |||||||||||||| |
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| T |
16021703 |
caaattgttttccttcatgtgacagtgtacattctgagttgggtaagttttcgagattgttta |
16021641 |
T |
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