View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14712_low_3 (Length: 518)
Name: NF14712_low_3
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14712_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 25524359 - 25524853
Alignment:
| Q |
1 |
cccgatccacctgtattagcaacaaccatatcgcgtccgatagcagccgtgagccgaaagagacctaatgccatttggtgcaccataagcaataaaagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524359 |
cccgatccacctgtattagcaacaaccatatcgcgtccgatagcagctgtgagccgaaagagacctaatgccatttggtgcaccataagcaataaaagca |
25524458 |
T |
|
| Q |
101 |
tgtagcggaagaacctgaaatattaaccggatgtcgaagaatatgtatgagttttaaaagaagacagnnnnnnnngtcataagacagtatatgaatgtaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||| ||||||| ||||| |||||||||||| ||||||||| ||||||||||||||| |
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| T |
25524459 |
tgtagcggaagaacctgaaatattaaccggaatgccaagagtatgtattagttt-aaaagaagacagaaaaaaa-gtcataagagagtatatgaatgtaa |
25524556 |
T |
|
| Q |
201 |
agtaaaatacctcccaggtgcaggagcaaatccaataatgtagtacacgacaccagtccatgcaacagattcaacaatggaataaggaaattgaagaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25524557 |
agtaaaatacctcccaggtgcaggagcaaatccaataatgtagtacacgacaccagtccacgcaacagattcaacaatggaataaggaaattgaagaatc |
25524656 |
T |
|
| Q |
301 |
catgtggacaatgtccatgcccatgccggataaaataaattgcctctttgtttatagaagacaggaagacgaaatatcaaaagtgacaactcagtagtcc |
400 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524657 |
catgtggacagtgtccatgcccatgccggataaaataaattgcctctttgtttatagaagacaggaagacgaaatatcaaaagtgacaactcagtagtcc |
25524756 |
T |
|
| Q |
401 |
cattaaacagcatgtgcaccaatgcataaaatagtgcagacatgtagagattccccgaaagttcgttcttaggataagtttttaagtgaaggtacat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
25524757 |
cattaaacagcatgtgcaccaatgcataaaatagtgcagacatgtagagattccccgaaagttcgttcttaggataagtttttacgtgaaggtacat |
25524853 |
T |
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