View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14712_low_7 (Length: 452)
Name: NF14712_low_7
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14712_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 34848424 - 34848853
Alignment:
| Q |
1 |
ttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaaa |
100 |
Q |
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| T |
34848424 |
ttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaaa |
34848523 |
T |
|
| Q |
101 |
gtattttattcgacttgcaaccttgaataagaagaagagacgttcacgtctctttgacatggtatatattatataatatttcatgatcaactaactagca |
200 |
Q |
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| T |
34848524 |
gtattttattcgacttgcaaccttgaataagaagaagagacgttcaagtctctttgacatggtatatattatataatatttcatgaccaactaactagca |
34848623 |
T |
|
| Q |
201 |
ctcctttcttaatttatgtatat-nnnnnnnttcttcgttcttaatcatgaaatatgcatttcatatttcattgaatttaatgaaatgcatacttcatgt |
299 |
Q |
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| T |
34848624 |
ctcctttcttaatttatatatataaaaaaaattcttcgttcttaatcatgaaatatgc-------atttcattgaatttaatgaaatgcatacttcatgt |
34848716 |
T |
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| Q |
300 |
ttattgaaattattaaaagtctcacatttaataaaatcaggtttataaaagagtttgtaggtgggaaaattttgtacttctttacaagcccattttgtaa |
399 |
Q |
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| T |
34848717 |
tcattcatattattaaaagtctcacatttaataaaatcaggtttataaaagagtttgtaggtgggaaaaatttgtacttctttacaagcccattttataa |
34848816 |
T |
|
| Q |
400 |
aagagnnnnnnnattcctctgatttcttaaaaagcat |
436 |
Q |
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| T |
34848817 |
aagagtttttttattcctctgatttcttaaaaagcat |
34848853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 42729544 - 42729445
Alignment:
| Q |
1 |
ttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaaa |
100 |
Q |
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|||||||| | |||||||| ||||||||||| ||||| || ||||||| ||||| ||| ||| ||||||| || ||||||||||| |||||||||||||| |
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| T |
42729544 |
ttgttggattagagaagctaggaaaaggagactggagaggaatctctaaaaactttgtcacttcaagaactcctacacaagttgctagccatgctcaaaa |
42729445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 44300607 - 44300691
Alignment:
| Q |
19 |
ttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaaagta |
103 |
Q |
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| T |
44300607 |
ttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagta |
44300691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 4386753 - 4386803
Alignment:
| Q |
56 |
tgtgactacaagaacaccaacacaagttgcaagccatgctcaaaagtattt |
106 |
Q |
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| T |
4386753 |
tgtgacaacaaggatacaaacacaagttgcaagtcatgctcaaaagtattt |
4386803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 29564910 - 29564950
Alignment:
| Q |
66 |
agaacaccaacacaagttgcaagccatgctcaaaagtattt |
106 |
Q |
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| T |
29564910 |
agaacaccaactcaagtagcaagccatgctcaaaagtattt |
29564950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 12134774 - 12134822
Alignment:
| Q |
67 |
gaacaccaacacaagttgcaagccatgctcaaaagtattttattcgact |
115 |
Q |
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| T |
12134774 |
gaacaccaacacaagtagcaagccatgcgcaaaaatacttcattcgact |
12134822 |
T |
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