View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14712_low_8 (Length: 447)

Name: NF14712_low_8
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14712_low_8
NF14712_low_8
[»] chr2 (4 HSPs)
chr2 (267-437)||(34237533-34237701)
chr2 (17-71)||(34237329-34237383)
chr2 (183-220)||(34237496-34237533)
chr2 (97-161)||(34237410-34237474)
[»] chr3 (1 HSPs)
chr3 (384-437)||(30860516-30860569)
[»] chr4 (1 HSPs)
chr4 (381-437)||(4901393-4901449)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 267 - 437
Target Start/End: Original strand, 34237533 - 34237701
Alignment:
Q  267 gctttttaattatactaagctaagaaaacagccacttgaagagttttttaattgcactaaactnnnnnnn-cttgttattatgaagccttttaactacgc 365  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||        ||||||||   ||||||||||||||||||    
T  34237533 gctttttaattacactaagctaagaaaacagccacttgaagagatttttaattgcactaaactaaaaaaaacttgttat---gaagccttttaactacgc 34237629  T
Q  366 tagcttgtaaaaaagaatagatgttggtttatttaaaaatgattaaattgggaacaatattaaggaattagt 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34237630 tagcttgtaaaaaagaatagatgttggtttatttaaaaatgattaaattgggaacaatattaaggaattagt 34237701  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 34237329 - 34237383
Alignment:
Q  17 acttctaaagcccggacctaaaggttgttatttaatattaatttctaataaagcc 71  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34237329 acttctaaagcctggacctaaaggttgttatttaatattaatttctaataaagcc 34237383  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 34237496 - 34237533
Alignment:
Q  183 gacagacgtgaaggttttaaaaacaagtataaaacatg 220  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34237496 gacagacgtgaaggttttaaaaacaagtataaaacatg 34237533  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 34237410 - 34237474
Alignment:
Q  97 tcctctgacaagtaaagacattactttcagattgtgtaannnnnnnnacacaatagtggctttgt 161  Q
    |||||||||||||||| ||||||||| ||||||||||||        ||||||||||||||||||    
T  34237410 tcctctgacaagtaaacacattacttccagattgtgtaaatttttttacacaatagtggctttgt 34237474  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 30860569 - 30860516
Alignment:
Q  384 agatgttggtttatttaaaaatgattaaattgggaacaatattaaggaattagt 437  Q
    |||| |||| |||||||||||||||||||| || | |||||| |||||||||||    
T  30860569 agattttggcttatttaaaaatgattaaatgggtaccaatatcaaggaattagt 30860516  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 4901449 - 4901393
Alignment:
Q  381 aatagatgttggtttatttaaaaatgattaaattgggaacaatattaaggaattagt 437  Q
    |||||||||||  |||||| |||| |||| || |||||| |||||||||||||||||    
T  4901449 aatagatgttgccttattttaaaaggattgaactgggaagaatattaaggaattagt 4901393  T

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