View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14712_low_9 (Length: 437)

Name: NF14712_low_9
Description: NF14712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14712_low_9
NF14712_low_9
[»] chr3 (35 HSPs)
chr3 (130-424)||(11772213-11772507)
chr3 (130-424)||(11778778-11779072)
chr3 (95-381)||(10430800-10431088)
chr3 (102-424)||(10360567-10360891)
chr3 (105-381)||(10372680-10372958)
chr3 (224-381)||(10666557-10666714)
chr3 (207-381)||(10035025-10035200)
chr3 (251-381)||(9841880-9842010)
chr3 (207-381)||(9852899-9853074)
chr3 (207-381)||(9980488-9980663)
chr3 (202-376)||(10583609-10583784)
chr3 (207-373)||(10520515-10520682)
chr3 (207-373)||(10503681-10503847)
chr3 (257-381)||(10129944-10130068)
chr3 (207-319)||(10263785-10263898)
chr3 (252-323)||(10092075-10092146)
chr3 (252-323)||(10198957-10199028)
chr3 (172-319)||(10680663-10680809)
chr3 (251-379)||(10531805-10531933)
chr3 (223-313)||(10086265-10086355)
chr3 (223-313)||(10193185-10193275)
chr3 (14-58)||(9980925-9980969)
chr3 (14-58)||(10035549-10035593)
chr3 (14-58)||(10130474-10130518)
chr3 (16-55)||(10430328-10430367)
chr3 (13-58)||(10264429-10264474)
chr3 (14-58)||(10360284-10360328)
chr3 (14-58)||(10372416-10372460)
chr3 (14-58)||(10584431-10584475)
chr3 (99-153)||(10092297-10092351)
chr3 (99-153)||(10199179-10199233)
chr3 (261-347)||(11242500-11242586)
chr3 (16-58)||(10504589-10504631)
chr3 (1-47)||(11778728-11778774)
chr3 (241-286)||(8585531-8585576)
[»] scaffold0083 (2 HSPs)
scaffold0083 (207-381)||(54474-54649)
scaffold0083 (14-58)||(54168-54212)
[»] chr2 (2 HSPs)
chr2 (175-388)||(26909903-26910115)
chr2 (1-58)||(26910553-26910610)
[»] chr4 (1 HSPs)
chr4 (223-379)||(17849812-17849968)
[»] chr8 (1 HSPs)
chr8 (223-379)||(44954549-44954705)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 130 - 424
Target Start/End: Complemental strand, 11772507 - 11772213
Alignment:
Q  130 atattttgagatatctttggattgattgttcaaacaattggtgagtagatagggaaaagaaaaacgtaccaaaaaaggggaacacagcttgttctcatat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  11772507 atattttgagatatctttggattgattgttcaaacaattggtgagtagatagggaaaagaaaaacgtaccagaaaaagggaacacagcttgttctcatat 11772408  T
Q  230 tgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772407 tgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatg 11772308  T
Q  330 gtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagctcctcacacatttgaaatgaaagtgatttcaacgaggaagggag 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772307 gtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagctcctcacacatttgaaatgaaagtgatttcaacgaggaagggag 11772213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 130 - 424
Target Start/End: Original strand, 11778778 - 11779072
Alignment:
Q  130 atattttgagatatctttggattgattgttcaaacaattggtgagtagatagggaaaagaaaaacgtaccaaaaaaggggaacacagcttgttctcatat 229  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  11778778 atattttaagatatctttggattgattgttcaaacaattgatgagtagatagggaaaagaaaaacgtaccagaaaaagggaacacagcttgttctcatat 11778877  T
Q  230 tgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatg 329  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11778878 tgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatg 11778977  T
Q  330 gtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagctcctcacacatttgaaatgaaagtgatttcaacgaggaagggag 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11778978 gtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagctcctcacacatttgaaatgaaagtgatttcaacgaggaagggag 11779072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 95 - 381
Target Start/End: Original strand, 10430800 - 10431088
Alignment:
Q  95 catgtagcagagattgattagttgctggtacgaaaatattttgagatatctttggatt-gattgttcaaacaattggtgagtagatagggaaaagaaaaa 193  Q
    ||||||||||||||| ||||||||||  || ||||||||||||||||||||||| ||| |||||||   ||||||  ||| |||| ||| ||||||||||    
T  10430800 catgtagcagagattaattagttgctaatatgaaaatattttgagatatctttgtatttgattgttatcacaattaatgactagagaggtaaaagaaaaa 10430899  T
Q  194 cgtaccaaaaaaggggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttcct 292  Q
    | ||||  ||||  |||||||| ||||| | ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  10430900 catacctgaaaactggaacacaacttgtctatcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgttccttcct 10430999  T
Q  293 tttatacctttcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagct 381  Q
    |||||||||||||||||||||||| ||| ||| |||  ||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  10431000 tttatacctttcttctaacaatggacattccctaattctcagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagct 10431088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 102 - 424
Target Start/End: Original strand, 10360567 - 10360891
Alignment:
Q  102 cagagattgattagttgctggtacgaaaatattttgagatatctttggatt-gattgttcaaacaattggtgagtagatagggaaaagaaaaacgtacca 200  Q
    |||||||| ||||||||||  || ||||||||||||||||||||||||||| |||||||    |||||  ||| |||| ||| ||||||||||| ||||     
T  10360567 cagagattaattagttgctaatatgaaaatattttgagatatctttggatttgattgttatcgcaattaatgactagagaggtaaaagaaaaacatacct 10360666  T
Q  201 aaaaaggggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatac 299  Q
     |||| ||||||||| ||||| | ||||||||||||||  || ||||| | |||||| ||||||||||| |||||||| |||||||| ||||||||||||    
T  10360667 gaaaacgggaacacaacttgtctatcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgttccttccttttatac 10360766  T
Q  300 ctttcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagctcctcacacatttgaaatg 399  Q
    ||||||||||||||||||||  |  | |||  ||||| |||||||||||| |||||||||||||| |||||||| | |||||  |||||    | |||||    
T  10360767 ctttcttctaacaatgggcaatcatagatgtccagttccttaagagagtcagggaggctgtcttctggtaatgatttaagcttttcacaaccataaaatg 10360866  T
Q  400 aaagtgatttcaacgaggaagggag 424  Q
     ||||||||||| ||||||||||||    
T  10360867 taagtgatttcagcgaggaagggag 10360891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 105 - 381
Target Start/End: Original strand, 10372680 - 10372958
Alignment:
Q  105 agattgattagttgctggtacgaaaatattttgagatatctttggatt-gattgttcaaacaattggtgagtagatagggaaaagaaaaacgtaccaaaa 203  Q
    ||||| ||||||||||  || ||||||||||||||||||||||||||| |||||||   ||||||  ||| |||| ||| ||||||||||| ||||  ||    
T  10372680 agattaattagttgctaatatgaaaatattttgagatatctttggatttgattgttatcacaattaatgactagagaggtaaaagaaaaacatacctgaa 10372779  T
Q  204 aaggggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctt 302  Q
    || ||||||||| ||||| | ||||||||||| ||  || ||||| | |||||| ||||||||||| ||||||||||||||||| |||||||||||||||    
T  10372780 aacgggaacacaacttgtctatcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgttccttccttttatacctt 10372879  T
Q  303 tcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagct 381  Q
    |||||||||||||||||||||  ||||  ||||  ||| ||||||   |||||||||||||| ||||||||||||||||    
T  10372880 tcttctaacaatgggcatcccataatgaccagtctcttcagagaggaagggaggctgtcttctggtaatgactcaagct 10372958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 224 - 381
Target Start/End: Complemental strand, 10666714 - 10666557
Alignment:
Q  224 tcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccc 323  Q
    ||||||||||||||| | ||||||   |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||    
T  10666714 tcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattcc 10666615  T
Q  324 caaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagct 381  Q
      ||||  ||||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  10666614 tcaatgtgcagttccttaagagagtcagggaggctgtcttctggtaatgactcaagct 10666557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 207 - 381
Target Start/End: Complemental strand, 10035200 - 10035025
Alignment:
Q  207 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 305  Q
    ||||||||| ||||| | ||||||||||||||  | |||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  10035200 gggaacacaacttgtctatcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttct 10035101  T
Q  306 tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagct 381  Q
    ||||||||||||||   |||||||   |||| | |||||||||| | |||||||||||| ||||||||||||||||    
T  10035100 tctaacaatgggcaattccaaatgcagagttccctaagagagtcagtgaggctgtcttctggtaatgactcaagct 10035025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 251 - 381
Target Start/End: Complemental strand, 9842010 - 9841880
Alignment:
Q  251 tatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcg 350  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||  ||| |||||||||     
T  9842010 tatgacagggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatggacatccccaaatgttcagacgctcaagagagtca 9841911  T
Q  351 gggaggctgtcttccggtaatgactcaagct 381  Q
    |||||||||||||| ||||||||||||||||    
T  9841910 gggaggctgtcttctggtaatgactcaagct 9841880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 207 - 381
Target Start/End: Complemental strand, 9853074 - 9852899
Alignment:
Q  207 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 305  Q
    ||||||||| ||||| | ||||||||| || |  |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  9853074 gggaacacaacttgtctatcatattgtaacctggtcatttatttctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttct 9852975  T
Q  306 tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagct 381  Q
    ||||||||||| |||||  |||||  ||||  ||| || ||||| |||||||||||||| ||||||||||| ||||    
T  9852974 tctaacaatggacatccataaatgtccagtctcttcagtgagtcagggaggctgtcttctggtaatgactctagct 9852899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 207 - 381
Target Start/End: Complemental strand, 9980663 - 9980488
Alignment:
Q  207 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 305  Q
    ||||||||| ||||| | ||||||||||||||| | ||||||   |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  9980663 gggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttct 9980564  T
Q  306 tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagct 381  Q
    |||||||||||||| ||    |||  ||||| ||||||||| || |||||||||||||| ||||||||||| ||||    
T  9980563 tctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaatgactctagct 9980488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 202 - 376
Target Start/End: Complemental strand, 10583784 - 10583609
Alignment:
Q  202 aaaaggggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacc 300  Q
    |||| ||||||||| ||||| | ||||||||||||||| | |||||| | |||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  10583784 aaaacgggaacacaacttgtctatcatattgtgactttgtgatttatttgtatgacagggatgtgagcaattttggaccaatattcattccttttatacc 10583685  T
Q  301 tttcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactc 376  Q
    |||||||||||||||||||       ||||||||| ||| ||||||||| |||||||||||||| |||||||||||    
T  10583684 tttcttctaacaatgggcaaaattggatggtcagtcgctcaagagagtcagggaggctgtcttctggtaatgactc 10583609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 373
Target Start/End: Complemental strand, 10520682 - 10520515
Alignment:
Q  207 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 305  Q
    ||||||||| ||||| | ||||||||||||||  | ||||||   |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  10520682 gggaacacaacttgtctatcatattgtgacttggtaatttattgatatgactgggatgtgagcaattttggaccaatgttccttccttttatacctttct 10520583  T
Q  306 tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatga 373  Q
    ||||||||||| ||| ||||||||  ||||  ||| |||||||| |||||||||||||| ||||||||    
T  10520582 tctaacaatggacattcccaaatgagcagtctcttcagagagtcagggaggctgtcttctggtaatga 10520515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 207 - 373
Target Start/End: Complemental strand, 10503847 - 10503681
Alignment:
Q  207 gggaacacagcttgttctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttctt 306  Q
    ||||||||||| ||| ||||||||||||||| | ||| ||| |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  10503847 gggaacacagcctgtcctcatattgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgttccttccttttatacctttctt 10503748  T
Q  307 ctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatga 373  Q
    ||||   ||||||||    |||| ||||| |||||||||| || || ||||||||||| ||||||||    
T  10503747 ctaatgttgggcatctttgaatgatcagtagcttaagagaatcaggaaggctgtcttctggtaatga 10503681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 257 - 381
Target Start/End: Complemental strand, 10130068 - 10129944
Alignment:
Q  257 agggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggagg 356  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||   ||||  ||||||| ||||||| || ||||||    
T  10130068 agggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatggacatccttgaatgcacagttgcataagagaatcagggagg 10129969  T
Q  357 ctgtcttccggtaatgactcaagct 381  Q
    |||||||| ||||||||||| ||||    
T  10129968 ctgtcttctggtaatgactctagct 10129944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 319
Target Start/End: Complemental strand, 10263898 - 10263785
Alignment:
Q  207 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 305  Q
    ||||||||| ||||| | ||||||||||||||  ||||||||   ||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  10263898 gggaacacaacttgtctatcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttggactaatgttccttccttttatacctttct 10263799  T
Q  306 tctaacaatgggca 319  Q
    ||||||||||||||    
T  10263798 tctaacaatgggca 10263785  T

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Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 10092146 - 10092075
Alignment:
Q  252 atgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccc 323  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10092146 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatccc 10092075  T

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Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 10199028 - 10198957
Alignment:
Q  252 atgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccc 323  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10199028 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatccc 10198957  T

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Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 10680809 - 10680663
Alignment:
Q  172 gagtagatagggaaaagaaaaacgtaccaaaaaaggggaacacagcttgttctcatattgtgactttttcatttatatctatgacagggatgtgagcgat 271  Q
    ||||||| ||| ||||||||||||||||  ||| ||  |||||| ||||  |||||||||||||||  |  |||||   |||||||||||||||||  ||    
T  10680809 gagtagagaggtaaaagaaaaacgtacctgaaacgga-aacacaacttgacctcatattgtgacttgcttgtttattattatgacagggatgtgagaaat 10680711  T
Q  272 tttggaccaatgttctttccttttatacctttcttctaacaatgggca 319  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||    
T  10680710 tttggaccgatgttcattccttttatacctttcttctaacaatgggca 10680663  T

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Target: chr3; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 10531933 - 10531805
Alignment:
Q  251 tatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcg 350  Q
    |||||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||||||||||||||   |   || || ||| | |||||||||       
T  10531933 tatgacagggatgtgagaaattttggaccaattttccttccttttatacctttcttctaacaatgggcaaaactcgatagtgagtagtttaagagaggaa 10531834  T
Q  351 gggaggctgtcttccggtaatgactcaag 379  Q
    |||||||||||||| ||||||||||||||    
T  10531833 gggaggctgtcttctggtaatgactcaag 10531805  T

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Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 10086355 - 10086265
Alignment:
Q  223 ctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaa 313  Q
    |||||||||||| ||   ||||||| | ||||||||| ||| |||  ||||||||||||||||| ||||||||||||||||||| ||||||    
T  10086355 ctcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaa 10086265  T

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Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 10193275 - 10193185
Alignment:
Q  223 ctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaa 313  Q
    |||||||||||| ||   ||||||| | ||||||||| ||| |||  ||||||||||||||||| ||||||||||||||||||| ||||||    
T  10193275 ctcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaa 10193185  T

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Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 9980969 - 9980925
Alignment:
Q  14 ctttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  9980969 ctttgatctcctgaaaagatgaaataagcattttcctttgattag 9980925  T

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Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 10035593 - 10035549
Alignment:
Q  14 ctttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  10035593 ctttgatctcctgaaaagatgaaataagcattttcctttgattag 10035549  T

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Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 10130518 - 10130474
Alignment:
Q  14 ctttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  10130518 ctttgatctcctgaaaagatgaaataagcattttcctttgattag 10130474  T

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Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 10430328 - 10430367
Alignment:
Q  16 ttgatctcctgaaaagatcaaataagcattttcctttgat 55  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10430328 ttgatctcctgaaaagatcaaataagcattttcctttgat 10430367  T

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Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 10264474 - 10264429
Alignment:
Q  13 actttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||    
T  10264474 actttgatcttctgaaaagatgaaataagcattttcctttgattag 10264429  T

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Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 10360284 - 10360328
Alignment:
Q  14 ctttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  10360284 ctttgatctcctgaaaagttgaaataagcattttcctttgattag 10360328  T

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Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 10372416 - 10372460
Alignment:
Q  14 ctttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  10372416 ctttgatctcctgaaaagatgaaataaacattttcctttgattag 10372460  T

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Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 10584475 - 10584431
Alignment:
Q  14 ctttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  10584475 ctttgatctcctgaaaagttgaaataagcattttcctttgattag 10584431  T

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Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 10092351 - 10092297
Alignment:
Q  99 tagcagagattgattagttgctggtacgaaaatattttgagatatctttggattg 153  Q
    ||||||||||| |||||||||   || ||||||||||||||||||||||||||||    
T  10092351 tagcagagattaattagttgccaatatgaaaatattttgagatatctttggattg 10092297  T

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Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 10199233 - 10199179
Alignment:
Q  99 tagcagagattgattagttgctggtacgaaaatattttgagatatctttggattg 153  Q
    ||||||||||| |||||||||   || ||||||||||||||||||||||||||||    
T  10199233 tagcagagattaattagttgccaatatgaaaatattttgagatatctttggattg 10199179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 11242500 - 11242586
Alignment:
Q  261 atgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatggtcagttgcttaagagag 347  Q
    |||||||| ||||||||||||||||| | | ||| |||||||||||||||||  |||||| ||  |||| |||||  ||||||||||    
T  11242500 atgtgagctattttggaccaatgttcctgcttttgatacctttcttctaacacagggcattccttaatgctcagtaccttaagagag 11242586  T

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Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 10504631 - 10504589
Alignment:
Q  16 ttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    ||||||||||| |||||||||||||||||||| |||| |||||    
T  10504631 ttgatctcctgtaaagatcaaataagcatttttctttcattag 10504589  T

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Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11778728 - 11778774
Alignment:
Q  1 tcatcaacatagactttgatctcctgaaaagatcaaataagcatttt 47  Q
    ||||| |||||  ||||||||||||||||| ||||||||||||||||    
T  11778728 tcatccacataagctttgatctcctgaaaatatcaaataagcatttt 11778774  T

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Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 8585531 - 8585576
Alignment:
Q  241 catttatatctatgacagggatgtgagcgattttggaccaatgttc 286  Q
    ||||||||| ||||||||| |||||||| || ||||||||||||||    
T  8585531 catttatatttatgacaggtatgtgagcaatgttggaccaatgttc 8585576  T

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Target: scaffold0083 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 207 - 381
Target Start/End: Original strand, 54474 - 54649
Alignment:
Q  207 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 305  Q
    ||||||||| ||||| | ||||||||||||||| | ||||||   |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  54474 gggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttct 54573  T
Q  306 tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagct 381  Q
    |||||||||||||| ||    |||  ||||| ||||||||| || |||||||||||||| ||||||||||| ||||    
T  54574 tctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaatgactctagct 54649  T

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Target: scaffold0083; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 54168 - 54212
Alignment:
Q  14 ctttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  54168 ctttgatctcctgaaaagatgaaataagcattttcctttgattag 54212  T

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Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 175 - 388
Target Start/End: Complemental strand, 26910115 - 26909903
Alignment:
Q  175 tagatagggaaaagaaaaacgtaccaaaaaaggggaacacagcttgttctcatattgtgactttttcatttatatctatgacagggatgtgagcgatttt 274  Q
    |||| ||| |||||||||||||||| | || ||| |||||| ||| | || ||||| |||||| || |||||| | |||||||||||||||||| |||||    
T  26910115 tagagaggtaaaagaaaaacgtacctagaacggg-aacacaacttatccttatattatgacttgttgatttatttgtatgacagggatgtgagcaatttt 26910017  T
Q  275 ggaccaatgttctttccttttatacctttcttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgac 374  Q
    |||||||||||| |||||||| |||||||||||||||||||||||     | ||   |||   || |||||||||||||||||||||||| |||||||||    
T  26910016 ggaccaatgttccttccttttgtacctttcttctaacaatgggcaagatgacatttccagcatctcaagagagtcggggaggctgtcttctggtaatgac 26909917  T
Q  375 tcaagctcctcaca 388  Q
    ||||| | ||||||    
T  26909916 tcaagtttctcaca 26909903  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26910610 - 26910553
Alignment:
Q  1 tcatcaacatagactttgatctcctgaaaagatcaaataagcattttcctttgattag 58  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||    
T  26910610 tcatcaacttaggctttgatctcctgaaaagatcaaataagcatttttctttaattag 26910553  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 223 - 379
Target Start/End: Original strand, 17849812 - 17849968
Alignment:
Q  223 ctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatcc 322  Q
    |||||||||||||||  || |  || |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| |  |||||||     
T  17849812 ctcatattgtgacttggtcctcaatttctatgacagggatgtgagcaattttggaccaatgttcctgccttttatacctttcttctaatatagggcatcg 17849911  T
Q  323 ccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaag 379  Q
    |||||||  |||| |||||||||||   |||||||||||||| ||||| ||||||||    
T  17849912 ccaaatgaccagtcgcttaagagaggaagggaggctgtcttctggtaacgactcaag 17849968  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 379
Target Start/End: Original strand, 44954549 - 44954705
Alignment:
Q  223 ctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttctaacaatgggcatcc 322  Q
    |||||||||||||||   ||| ||| ||||||||| | || | ||| ||||||||||||||||| |||||| |||||||||||||| | |  |||||||     
T  44954549 ctcatattgtgacttggccatctatttctatgacatgaattttagcaattttggaccaatgttccttccttctatacctttcttctgatacagggcatcg 44954648  T
Q  323 ccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaag 379  Q
    |||||||  |||| | |||||||||| ||||||||| ||||| ||||| ||||||||    
T  44954649 ccaaatgaccagtcgattaagagagttggggaggctttcttctggtaacgactcaag 44954705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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