View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_high_18 (Length: 446)
Name: NF14713_high_18
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 43294630 - 43294271
Alignment:
| Q |
7 |
tgtcgaag-aatatgtaagttctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattcc |
105 |
Q |
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| T |
43294630 |
tgtcgaagtaatatgtaagttctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattcc |
43294531 |
T |
|
| Q |
106 |
ctttctatcttagtttctatatctttaccactttcaccatataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294530 |
ctttctatcttagtttctatatctttaccactttcaccatataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaac |
43294431 |
T |
|
| Q |
206 |
ttatacttgagttatagtgactagtgagtgagtagtaaggataagaatataggtgttaagtttatattgtgggaataactctcatcaatcaacaaaaaat |
305 |
Q |
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| T |
43294430 |
ttatacttgagttatagtgactagt----gagtagtaaggataagaatataggtgttaagtttatattgtgggaataactctcatcaatcaacaaaaaaa |
43294335 |
T |
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| Q |
306 |
tttaatcaaaggaaccaaaccaaaatgataacatctcagagacatgacataggtgttaagttta |
369 |
Q |
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| T |
43294334 |
tttaatcaaaggaaccaaaccaaaatgataacatctcagagacatgacataggtgttaagttta |
43294271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 44026322 - 44026690
Alignment:
| Q |
7 |
tgtcgaag-aatatgtaagttctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattcc |
105 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44026322 |
tgtcgaagtaatatgtaagttctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattcc |
44026421 |
T |
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| Q |
106 |
ctttctatcttagtttctatatctttaccactttcaccatataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44026422 |
ctttctatcttagtttctatatctttaccactttcaccatataatataatattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaac |
44026521 |
T |
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| Q |
206 |
ttatacttgagttatagtgactagtgagtgagtagtaaggataagaatataggtgttaagtttatattgtgggaataactctcatcaatcaacaaaaa-- |
303 |
Q |
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| T |
44026522 |
ttatacttgagttatagtgact----agtgagtagtaaggataagaatataggtgttaagtttatattgtgggaataactctcatcaatcaacaaaaaaa |
44026617 |
T |
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| Q |
304 |
-------attttaatcaaaggaaccaaaccaaaatgataacatctcagagacatgacataggtgttaagttta |
369 |
Q |
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| T |
44026618 |
aaaattgattttaatcaaaggaaccaaaccaaaatgataacatctcagagacatgacataggtgttaagttta |
44026690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 412
Target Start/End: Original strand, 44026688 - 44026716
Alignment:
| Q |
384 |
ttacttttgtaatttgaatgtggatataa |
412 |
Q |
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| T |
44026688 |
ttacttttgtaatttgaatgtggatataa |
44026716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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