View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_high_20 (Length: 426)
Name: NF14713_high_20
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 11758328 - 11758716
Alignment:
| Q |
19 |
cggataactcaggttacgattccgatctagcttgttctgagaaactgcaattctcttactacgacgatgatgaatcggaggagtattgttcaagtcaggg |
118 |
Q |
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| T |
11758328 |
cggataattcaggttacgattccgatctagcttgttctgagaaactgcaattctcttactacgacgatgatgaatcggaggagtattgttcaagtcaggg |
11758427 |
T |
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| Q |
119 |
aactacattctccgatgttcgctcggagattttcagtgaaggttcagattattctccgtcgcagttcattgattctggtagcgagttttcacaaggatcc |
218 |
Q |
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| T |
11758428 |
aactacattctctgatcttcactcggatattttcagtgaaggttcagattattctccgtcgcagttcattgattctggtagcgagttttcacaaggatcc |
11758527 |
T |
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| Q |
219 |
gttggtgaaactccttctcatacttattcgttgcttcttcgataccgcgacgaattcgcgaagctaggttctccggttaaagctacttcaattgttgtag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11758528 |
gttggtgaaactccttctcatacttattcgttgcttcttcgataccgcgacgaattcgcaaagctaggttctccggttaaagctacttcaattgttgtag |
11758627 |
T |
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| Q |
319 |
aagatttttctcttcataacaatgtacgttttgtttcatcaatttcttagttcaaaatgttaataatatgctaattattctagtttaac |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11758628 |
aagatttttctcttcataacaatgtacgttttgtttcatcaatttcttagttcaaaatgttaataatatgctaattattctagtttaac |
11758716 |
T |
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