View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_high_25 (Length: 398)

Name: NF14713_high_25
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_high_25
NF14713_high_25
[»] chr3 (19 HSPs)
chr3 (51-381)||(4849176-4849507)
chr3 (51-373)||(4862370-4862692)
chr3 (66-370)||(4857401-4857704)
chr3 (51-156)||(4846525-4846630)
chr3 (69-158)||(4879132-4879221)
chr3 (313-381)||(4862691-4862759)
chr3 (51-151)||(49757920-49758019)
chr3 (51-142)||(46530370-46530459)
chr3 (54-152)||(17035376-17035474)
chr3 (14-46)||(6079883-6079915)
chr3 (14-46)||(11028093-11028125)
chr3 (14-46)||(15212759-15212791)
chr3 (14-46)||(15251978-15252010)
chr3 (14-46)||(46124050-46124082)
chr3 (51-106)||(7137300-7137355)
chr3 (51-158)||(21585659-21585766)
chr3 (80-145)||(45651180-45651245)
chr3 (14-46)||(9767936-9767968)
chr3 (14-46)||(48119770-48119802)
[»] chr1 (8 HSPs)
chr1 (51-142)||(11066896-11066987)
chr1 (81-147)||(43020917-43020983)
chr1 (57-151)||(34342469-34342563)
chr1 (50-108)||(15716991-15717049)
chr1 (80-151)||(4968475-4968546)
chr1 (14-46)||(15723295-15723327)
chr1 (14-46)||(25613618-25613650)
chr1 (14-46)||(44201676-44201708)
[»] chr5 (9 HSPs)
chr5 (51-125)||(7734013-7734087)
chr5 (51-142)||(17822015-17822106)
chr5 (51-130)||(6205683-6205763)
chr5 (14-46)||(22362579-22362611)
chr5 (51-151)||(39585178-39585277)
chr5 (51-142)||(9051155-9051246)
chr5 (65-141)||(42332529-42332607)
chr5 (14-47)||(40802605-40802638)
chr5 (14-46)||(27032685-27032717)
[»] chr7 (13 HSPs)
chr7 (65-206)||(25610940-25611081)
chr7 (65-142)||(2766425-2766502)
chr7 (80-148)||(42850981-42851048)
chr7 (51-142)||(33797331-33797422)
chr7 (80-147)||(40787045-40787112)
chr7 (80-142)||(9217878-9217940)
chr7 (82-197)||(13701630-13701745)
chr7 (82-147)||(33429278-33429344)
chr7 (80-125)||(29356855-29356900)
chr7 (14-46)||(3568532-3568564)
chr7 (14-46)||(10206681-10206713)
chr7 (82-142)||(13637998-13638058)
chr7 (13-45)||(48644154-48644186)
[»] scaffold0025 (1 HSPs)
scaffold0025 (51-142)||(11810-11901)
[»] chr4 (13 HSPs)
chr4 (51-147)||(21392962-21393058)
chr4 (51-142)||(37442134-37442222)
chr4 (52-139)||(17942610-17942697)
chr4 (80-142)||(16506758-16506820)
chr4 (65-118)||(4816039-4816092)
chr4 (14-46)||(51030170-51030202)
chr4 (81-125)||(53353976-53354020)
chr4 (97-152)||(32203805-32203860)
chr4 (51-158)||(56084588-56084694)
chr4 (80-142)||(12294775-12294837)
chr4 (52-105)||(24535430-24535482)
chr4 (51-139)||(14065424-14065511)
chr4 (14-46)||(43593850-43593882)
[»] chr2 (9 HSPs)
chr2 (54-142)||(41207613-41207701)
chr2 (51-142)||(38421098-38421189)
chr2 (81-142)||(9045030-9045091)
chr2 (54-158)||(43442286-43442388)
chr2 (14-46)||(2707139-2707171)
chr2 (14-44)||(25330896-25330926)
chr2 (14-44)||(29406694-29406724)
chr2 (65-126)||(4552519-4552580)
chr2 (14-46)||(45073826-45073858)
[»] chr6 (15 HSPs)
chr6 (51-142)||(22793129-22793219)
chr6 (14-46)||(8848102-8848134)
chr6 (14-46)||(19383001-19383033)
chr6 (14-43)||(13548363-13548392)
chr6 (14-43)||(17724584-17724613)
chr6 (14-46)||(2666148-2666180)
chr6 (14-46)||(15907097-15907129)
chr6 (14-42)||(18670242-18670270)
chr6 (14-46)||(18691757-18691789)
chr6 (14-46)||(19214803-19214835)
chr6 (14-46)||(21393430-21393462)
chr6 (14-46)||(23160783-23160815)
chr6 (170-206)||(30592131-30592167)
chr6 (14-46)||(31569330-31569362)
chr6 (14-46)||(32616920-32616952)
[»] chr8 (11 HSPs)
chr8 (54-158)||(33299880-33299984)
chr8 (51-142)||(11876265-11876355)
chr8 (51-142)||(11891272-11891362)
chr8 (51-109)||(29037886-29037944)
chr8 (81-155)||(38745019-38745093)
chr8 (54-151)||(12701659-12701755)
chr8 (14-43)||(23126938-23126967)
chr8 (14-46)||(8213514-8213546)
chr8 (14-46)||(21349420-21349452)
chr8 (14-46)||(23120544-23120576)
chr8 (82-158)||(31445473-31445549)
[»] scaffold0337 (1 HSPs)
scaffold0337 (14-46)||(793-825)
[»] scaffold0072 (1 HSPs)
scaffold0072 (14-46)||(46306-46338)
[»] scaffold0041 (1 HSPs)
scaffold0041 (14-44)||(32284-32314)
[»] scaffold0590 (1 HSPs)
scaffold0590 (14-46)||(8960-8992)
[»] scaffold0553 (1 HSPs)
scaffold0553 (14-46)||(6571-6603)
[»] scaffold0422 (1 HSPs)
scaffold0422 (18-46)||(10391-10419)
[»] scaffold0086 (1 HSPs)
scaffold0086 (14-46)||(42477-42509)
[»] scaffold0077 (1 HSPs)
scaffold0077 (14-46)||(52542-52574)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 51 - 381
Target Start/End: Original strand, 4849176 - 4849507
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtt 150  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  4849176 tacttataatttcaatctatatcaaagagtttatataaaatatcggttgtaatttacaagcagaatttctataaattatcatagataatctatacacgtt 4849275  T
Q  151 aacgtaatnnnnnnn-gcagaaagatgagcacgtgagtccccgtcttttcactagtttattataaagaaaatgctaaaatgttcagttcttttggtcata 249  Q
     |||||||        ||||||||||| |||||| | | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4849276 cacgtaataaaaaaaagcagaaagatgcgcacgtaaatgcccgtctttgcactagtttattataaaaaaaatgctaaaatgttcagttcttttggtcata 4849375  T
Q  250 ctgcacgaattatttggtagcttgacatatatgttactaatgttaatttcactctcactttaattatgttattccacagtcctctaaagttgtgtttctc 349  Q
    |||||| ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  4849376 ctgcacaaattatttggtagcttgacatatatgttactgatgtaaacttcactctcactttaattatgttactccacagtcctctaaaattgtgtttctc 4849475  T
Q  350 tttttaccctaaaacttctcttttggattatt 381  Q
    ||||| ||||||||||||||||||||||||||    
T  4849476 ttttttccctaaaacttctcttttggattatt 4849507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 51 - 373
Target Start/End: Original strand, 4862370 - 4862692
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtt 150  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4862370 tacttgtaattttaatctatatcaaagagtttttataaaatataggttgtaatttacacgcagaatttctataaattatcgtagataatctatacacgtt 4862469  T
Q  151 aacgtaatnnnnnnngcagaaagatgagcacgtgagtccccgtcttttcactagtttattataaagaaaatgctaaaatgttcagttcttttggtcatac 250  Q
    |||||| |       | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||    
T  4862470 aacgtagtaaaaagagaagaaagatgcgcacgtgagtgcccgtcttttcactagtttattataaagaaaatgttaaaatgttcaattattttggtcatac 4862569  T
Q  251 tgcacgaattatttggtagcttgacatatatgttactaatgttaatttcactctcactttaattatgttattccacagtcctctaaagttgtgtttctct 350  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||    
T  4862570 tgcacgaattatttggtagcctggcatatatgttactaatgttaatttcactctcactttaattatgttactccacagtcctctaaaatcgtgtttctct 4862669  T
Q  351 ttttaccctaaaacttctctttt 373  Q
    |||| ||||||||||||||||||    
T  4862670 ttttgccctaaaacttctctttt 4862692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 66 - 370
Target Start/End: Original strand, 4857401 - 4857704
Alignment:
Q  66 tctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaacgtaatnnnnnnn 165  Q
    ||||||||||| | |||||||||||||||  |||||||||||| |||||||||| ||||||||||||| ||||| ||||||| ||||||||||           
T  4857401 tctatatcaaaaaatttatataaaatatcgtttgtaatttacacgcagaatttcaataaattatcgtaaataatttatacacattaacgtaataaaaaga 4857500  T
Q  166 gcagaaagatgagcacgtgagtccccgtcttttcactagtttattataaagaaaatgctaaaatgttcagttcttttggtcatactgcacgaattatttg 265  Q
    |||||||||||| || |||| | | ||||||||| |||||||||||||||||| |||||||| ||||  ||||||||| ||||||| ||| |||||||||    
T  4857501 gcagaaagatgaacatgtgaatgctcgtcttttcgctagtttattataaagaatatgctaaa-tgtttggttcttttg-tcatactacacaaattatttg 4857598  T
Q  266 gtagcttgacatatatgttactaatgttaatttcactctcactttaattatgttattccacagt-cctctaaagttgtgtttctctttttaccctaaaac 364  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| || |  ||||||||||||| |||||||||    
T  4857599 gtagctttatatatatgttactaatgttaatttcactctcactttaattatgttactccagagtccctctgaaataatgtttctctttttgccctaaaac 4857698  T
Q  365 ttctct 370  Q
    ||||||    
T  4857699 ttctct 4857704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 4846525 - 4846630
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtt 150  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  4846525 tacttataattttaatctatatcaaagagtttatataaaatatcggttgtaatttacacgcaaaatttctataaattatcgtagataatctatacacgtt 4846624  T
Q  151 aacgta 156  Q
    ||||||    
T  4846625 aacgta 4846630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 4879132 - 4879221
Alignment:
Q  69 atatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaacgtaat 158  Q
    |||||||| | |||||||||||||||  |||||||||||| |||||||||| ||||||||||||| ||||| ||||||| ||||||||||    
T  4879132 atatcaaaaaatttatataaaatatcgtttgtaatttacacgcagaatttcaataaattatcgtaaataatttatacacattaacgtaat 4879221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 4862691 - 4862759
Alignment:
Q  313 ttatgttattccacagtcctctaaagttgtgtttctctttttaccctaaaacttctcttttggattatt 381  Q
    |||||||| |||||| ||||||||| | |||||||||||||| |||||||||||||||||| |||||||    
T  4862691 ttatgttactccacaatcctctaaaatcgtgtttctctttttgccctaaaacttctctttttgattatt 4862759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 49758019 - 49757920
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtt 150  Q
    |||||||||||| ||||||||||||| | |||||||||| ||||  |||||||||||| ||| |||||||||||| |||| | ||||||||| || ||||    
T  49758019 tacttataattttaatctatatcaaaaa-tttatataaattatcgtttgtaatttacacgcaaaatttctataaaatatcattgataatctacacgcgtt 49757921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 46530370 - 46530459
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    |||||||||||| ||||||||||||| | |||||||||||||||| || ||||||||||| | ||||| |||||| |||||| |||||||||    
T  46530370 tacttataattttaatctatatcaaaaa-tttatataaaatatcatttttaatttacatg-aaaatttatataaaatatcgttgataatcta 46530459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 17035376 - 17035474
Alignment:
Q  54 ttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaa 152  Q
    |||||||||  |||||| ||||| |  |||||||||||| |  |||||||| ||||||| |||||||||||| ||||||  |||||||||  |||||||    
T  17035376 ttataatttttatctatttcaaaaaaattatataaaatagcgtttgtaattcacatgcaaaatttctataaaatatcgttaataatctatgaacgttaa 17035474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 6079883 - 6079915
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  6079883 agcgcagtagaaaaagcggacagacgggcacgg 6079915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 11028125 - 11028093
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  11028125 agcgcagtagaaaaagcggacagacgggcacgg 11028093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 15212791 - 15212759
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  15212791 agcgcagtagaaaaagcggacagacgggcacgg 15212759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 15252010 - 15251978
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  15252010 agcgcagtagaaaaagcggacagacgggcacgg 15251978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 46124082 - 46124050
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  46124082 agcgcagtagaaaaagcggacagacgggcacgg 46124050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 7137355 - 7137300
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaattta 106  Q
    |||||||||||| ||||||||||||| |  ||||||||||||||  ||||||||||    
T  7137355 tacttataattttaatctatatcaaaaaaattatataaaatatcgtttgtaattta 7137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 21585766 - 21585659
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtt 150  Q
    ||||| |||| | ||||||||| ||| | |||| ||||||||||  ||||||||||| |||| | ||| |||||| |||||  ||||||||| ||||| |    
T  21585766 tacttgtaatcttaatctatattaaaaaatttaaataaaatatcgtttgtaatttacgtgcaaattttttataaaatatcgctgataatctacacacgct 21585667  T
Q  151 aacgtaat 158  Q
    | ||||||    
T  21585666 accgtaat 21585659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 45651245 - 45651180
Alignment:
Q  80 tttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatac 145  Q
    |||||| |||||||   ||||||| |||||||| |||||||||||| |||| | ||||||||||||    
T  45651245 tttataaaaaatattgtttgtaatatacatgcaaaatttctataaaatatcattgataatctatac 45651180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 9767936 - 9767968
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  9767936 agcgcagtagaaagagcggacagacgggcacgg 9767968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 48119770 - 48119802
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||| ||||||||||||||||||||||||||    
T  48119770 agcgcaatagaaaaagcggacagacgggcacgg 48119802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 11066987 - 11066896
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    |||||||||||| ||||||||||||| | ||||||||||||||   |||||||||||| ||| |||||||||||| |||||| |||||||||    
T  11066987 tacttataattttaatctatatcaaaaaatttatataaaatattgtttgtaatttacacgcaaaatttctataaaatatcgttgataatcta 11066896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 43020917 - 43020983
Alignment:
Q  81 ttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacac 147  Q
    ||||||||||||||| |||||||||||| ||| |||||||||||| |||||| ||||||||| ||||    
T  43020917 ttatataaaatatcatttgtaatttacacgcaaaatttctataaaatatcgttgataatctacacac 43020983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 34342469 - 34342563
Alignment:
Q  57 taatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtta 151  Q
    |||||| ||||||||||| | | |||||||||||||||  |||||||||||| ||| ||||| |||||| ||||||  |||||||| || |||||    
T  34342469 taattttaatctatatcagaaaatttatataaaatatcgtttgtaatttacacgcaaaatttatataaaatatcgttaataatctacacgcgtta 34342563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 15716991 - 15717049
Alignment:
Q  50 gtacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttaca 108  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||   ||||||||||||    
T  15716991 gtacttataattttaatctatatcaaaaaatttatataaaatattgtttgtaatttaca 15717049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 4968546 - 4968475
Alignment:
Q  80 tttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtta 151  Q
    |||||||||||||||| ||||| |||| |  || |||||||||||| |||||| ||||||||| || |||||    
T  4968546 tttatataaaatatcatttgtattttataaacaaaatttctataaaatatcgttgataatctacacgcgtta 4968475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 15723295 - 15723327
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  15723295 agcgcagtagaaagagcggacagacgggcacgg 15723327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 25613618 - 25613650
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||||||||||||||||| |||||    
T  25613618 agcgcagtagaaaaagcggacagacggacacgg 25613650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 44201676 - 44201708
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  44201676 agcgcagtagaaagagcggacagacgggcacgg 44201708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 7734087 - 7734013
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaa 125  Q
    |||||||||||| ||||||||||||| | |||||||||||||||| |||||||||||| ||| ||||||||||||    
T  7734087 tacttataattttaatctatatcaaatattttatataaaatatcatttgtaatttacacgcaaaatttctataaa 7734013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 17822106 - 17822015
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    ||||||||||||  ||| |||||||| | |||||||||||||||| |||||||||||||||| |||||||||||| ||| ||  ||||||||    
T  17822106 tacttataatttttatcaatatcaaaaaatttatataaaatatcatttgtaatttacatgcataatttctataaaatattgttaataatcta 17822015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 6205763 - 6205683
Alignment:
Q  51 tacttataattt-caatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatc 130  Q
    |||||||||||| | |||||||||||| | |||||||||||||||  ||||||||||||| || |||||||||||| ||||    
T  6205763 tacttataattttctatctatatcaaaaaatttatataaaatatcgtttgtaatttacatacaaaatttctataaaatatc 6205683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 22362611 - 22362579
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  22362611 agcgcagtagaaaaagcggacagacgggcacgg 22362579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 39585178 - 39585277
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtt 150  Q
    |||||||||||| | | ||||||||| | ||||||||||| |||  |||||||||||| ||| ||||| |||||| ||| || ||||||||| ||| |||    
T  39585178 tacttataattttagtttatatcaaaaa-tttatataaaaaatcgtttgtaatttacacgcaaaatttatataaaatatagttgataatctacacaagtt 39585276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 9051155 - 9051246
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    |||||||||| | ||||||||||||| | ||| | ||||| |||  ||||||||||||  || |||||||||||| ||| || |||||||||    
T  9051155 tacttataatcttaatctatatcaaataatttgtgtaaaacatcgtttgtaatttacacacaaaatttctataaagtattgttgataatcta 9051246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 42332529 - 42332607
Alignment:
Q  65 atctatatcaaagagtttatataaaatatcagttgtaatttacat--gcagaatttctataaattatcgtagataatct 141  Q
    |||||||||||  | |||||||||| ||||  |||||||||||||  |||||||||||||||| ||| || ||||||||    
T  42332529 atctatatcaataaatttatataaactatcgtttgtaatttacatatgcagaatttctataaaatattgttgataatct 42332607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 40802605 - 40802638
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacggc 47  Q
    |||||||||||||||||| |||||||||||||||    
T  40802605 agcgcagtagaaaaagcgaacagacgggcacggc 40802638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 27032685 - 27032717
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  27032685 agcgcagtagaaagagcggacagacgggcacgg 27032717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 25611081 - 25610940
Alignment:
Q  65 atctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaacgtaatnnnnnn 164  Q
    |||||||||||| | |||||||||||||||| |||||||||||| ||| |||||||||||| |||| | ||||||||| |   |||| ||||||          
T  25611081 atctatatcaaaaaatttatataaaatatcatttgtaatttacacgcaaaatttctataaaatatcattgataatctacaagtgttagcgtaataaaaag 25610982  T
Q  165 ngcagaaagatgagcacgtgagtccccgtcttttcactagtt 206  Q
     | ||||||| |||||||||||| ||| ||||||| ||||||    
T  25610981 tgtagaaagaagagcacgtgagtgcccatcttttcgctagtt 25610940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 2766425 - 2766502
Alignment:
Q  65 atctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    |||||||||||| | |||||||||||||||  ||||||||||||  || |||||||||||| |||||| |||||||||    
T  2766425 atctatatcaaaaaatttatataaaatatcgtttgtaatttacaatcaaaatttctataaaatatcgttgataatcta 2766502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 42851048 - 42850981
Alignment:
Q  80 tttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacg 148  Q
    |||||||||||| ||  |||||||||||||||| |||||||||||| |||||| ||||||||| |||||    
T  42851048 tttatataaaatctcgtttgtaatttacatgca-aatttctataaaatatcgttgataatctacacacg 42850981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 33797331 - 33797422
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    ||||| |||||| ||||||||| ||| | | |||||||||||||| ||||||||||||  || || ||||||||| |||  | |||||||||    
T  33797331 tacttttaattttaatctatataaaaaattctatataaaatatcatttgtaatttacacacaaaacttctataaaatatatttgataatcta 33797422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 40787112 - 40787045
Alignment:
Q  80 tttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacac 147  Q
    ||||||||||| |||| || ||||||||| ||| ||| | |||||| |||||| ||||||||||||||    
T  40787112 tttatataaaacatcatttttaatttacacgcaaaatctatataaaatatcgttgataatctatacac 40787045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 9217878 - 9217940
Alignment:
Q  80 tttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    |||||||||||||||  ||||| |||||| | | |||||||||||| |||||| |||||||||    
T  9217878 tttatataaaatatcgtttgtagtttacacgtaaaatttctataaaatatcgttgataatcta 9217940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 13701745 - 13701630
Alignment:
Q  82 tatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaacgtaatnnnnnnngcagaaagatgagcac 181  Q
    ||||||||||||   |||||||||||| ||| |||||||||||| ||||||  |||||||| ||| |||| || |||       |  |||||| ||||||    
T  13701745 tatataaaatattgtttgtaatttacacgcaaaatttctataaaatatcgttcataatctacacatgttagcgcaataaaaaaagtggaaagacgagcac 13701646  T
Q  182 gtgagtccccgtcttt 197  Q
    |||||| |||||||||    
T  13701645 gtgagtacccgtcttt 13701630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 33429278 - 33429344
Alignment:
Q  82 tatataaaatatcagttgtaatttacatgcagaattt-ctataaattatcgtagataatctatacac 147  Q
    |||||||||||||  ||  |||||||||||| ||||| |||||||||||||| ||||||||| ||||    
T  33429278 tatataaaatatcgtttaaaatttacatgcaaaattttctataaattatcgttgataatctacacac 33429344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 29356900 - 29356855
Alignment:
Q  80 tttatataaaatatcagttgtaatttacatgcagaatttctataaa 125  Q
    |||||||||||||| | |||||||||||| ||| ||||||||||||    
T  29356900 tttatataaaatattatttgtaatttacacgcaaaatttctataaa 29356855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 3568564 - 3568532
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  3568564 agcgcagtagaaagagcggacagacgggcacgg 3568532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 10206713 - 10206681
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||| ||||||||||||||||||||||||    
T  10206713 agcgcagtggaaaaagcggacagacgggcacgg 10206681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 13638058 - 13637998
Alignment:
Q  82 tatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    ||||||||||||   |||||||||||| ||| |||||||||||| ||||||  ||||||||    
T  13638058 tatataaaatattgtttgtaatttacacgcaaaatttctataaaatatcgttcataatcta 13637998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 48644154 - 48644186
Alignment:
Q  13 cagcgcagtagaaaaagcggacagacgggcacg 45  Q
    |||| ||||||||||||||||||||||||||||    
T  48644154 cagcacagtagaaaaagcggacagacgggcacg 48644186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 11810 - 11901
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    |||||||||||| ||| ||||||||| |  ||||||||||||||| ||||||||||||  || |||||||||||| |||||| |||||||||    
T  11810 tacttataattttaatttatatcaaaaaaattatataaaatatcatttgtaatttacagacaaaatttctataaaatatcgttgataatcta 11901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 21393058 - 21392962
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacac 147  Q
    |||||||||| | ||||||||| ||| | ||||||||||||||   |||||||||||| ||| |||||||||||| ||| || ||||||||| ||||    
T  21393058 tacttataatattaatctatataaaaaaatttatataaaatattgtttgtaatttacacgcaaaatttctataaaatattgttgataatctacacac 21392962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 37442134 - 37442222
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    |||||||||||| ||| ||||| ||| |  ||||||||||||||  |||||||||||| ||| |||||||||||| |||||| |||||||||    
T  37442134 tacttataattttaatttatataaaaaa--ttatataaaatatcgtttgtaatttacacgcaaaatttctataaa-tatcgttgataatcta 37442222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 17942610 - 17942697
Alignment:
Q  52 acttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataat 139  Q
    ||||||||||| |||||| ||||||   |||||||||||||||  ||||||||||||  || |||||||||||| || ||| ||||||    
T  17942610 acttataattttaatctacatcaaaatttttatataaaatatcgtttgtaatttacacacaaaatttctataaaataccgttgataat 17942697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 16506758 - 16506820
Alignment:
Q  80 tttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    |||||||||||||| | |||||||||||| | | |||||||||||| |||||| |||||||||    
T  16506758 tttatataaaatattatttgtaatttacacgtaaaatttctataaaatatcgttgataatcta 16506820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 4816039 - 4816092
Alignment:
Q  65 atctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaattt 118  Q
    |||||||||||| | |||||||||||||||  |||||||||||||||| |||||    
T  4816039 atctatatcaaaaattttatataaaatatcgtttgtaatttacatgcaaaattt 4816092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 51030202 - 51030170
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  51030202 agcgcagtagaaaaagcggacagacgggcacgg 51030170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 53354020 - 53353976
Alignment:
Q  81 ttatataaaatatcagttgtaatttacatgcagaatttctataaa 125  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||    
T  53354020 ttatataaaatatcgtttgtaatttacatgcaaaatttctataaa 53353976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 32203860 - 32203805
Alignment:
Q  97 ttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaa 152  Q
    |||||||||||||||| ||||| |||||| |||| | ||||||||| |||||||||    
T  32203860 ttgtaatttacatgcaaaatttttataaaatatcatcgataatctacacacgttaa 32203805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 56084694 - 56084588
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtt 150  Q
    |||||||||||| ||||||||| ||| |  ||||||||||||||  |||||||||||| | | |||||  ||||| |||||| |||||| || || ||||    
T  56084694 tacttataattttaatctatataaaaaaaattatataaaatatcgtttgtaatttacacgta-aattttgataaaatatcgttgataatatacacgcgtt 56084596  T
Q  151 aacgtaat 158  Q
    | ||||||    
T  56084595 agcgtaat 56084588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 12294775 - 12294837
Alignment:
Q  80 tttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    ||||||||||| |||  |||||||||||| ||| |||||||||||| |||||| |||| ||||    
T  12294775 tttatataaaaaatcgtttgtaatttacacgcaaaatttctataaaatatcgttgatagtcta 12294837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 24535430 - 24535482
Alignment:
Q  52 acttataatttcaatctatatcaaagagtttatataaaatatcagttgtaattt 105  Q
    ||||||||||| ||||||||||||| || ||||||||||||||| || ||||||    
T  24535430 acttataattttaatctatatcaaaaag-ttatataaaatatcatttttaattt 24535482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 14065424 - 14065511
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataat 139  Q
    |||||||||||| ||||||||||||| |  |||||||||| ||   |||||||||||| ||| |||||| ||||| |||| | ||||||    
T  14065424 tacttataattttaatctatatcaaaaaaattatataaaacattgtttgtaatttacacgca-aatttcgataaaatatcattgataat 14065511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 43593850 - 43593882
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  43593850 agcgcagtagaaagagcggacagacgggcacgg 43593882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 41207613 - 41207701
Alignment:
Q  54 ttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    ||||||||| |||||||| |||| | |||||||||||||||  |||| ||||||| | | |||||||||||| |||||| |||||||||    
T  41207613 ttataattttaatctataacaaaaaatttatataaaatatcctttgtcatttacacgtaaaatttctataaaatatcgttgataatcta 41207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 38421098 - 38421189
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    ||||||||||||  |||||||| ||| | |||||||||||||||| |||| |||||||  || |||||||||||| ||| || |||||||||    
T  38421098 tacttataatttttatctatattaaaaaatttatataaaatatcatttgtgatttacacacaaaatttctataaaatattgttgataatcta 38421189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 9045091 - 9045030
Alignment:
Q  81 ttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    ||||||||||||||  |||||||||| ||||| |||||||||||| |||||| |||||||||    
T  9045091 ttatataaaatatcgtttgtaatttaaatgcaaaatttctataaaatatcgttgataatcta 9045030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 43442388 - 43442286
Alignment:
Q  54 ttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaac 153  Q
    ||||||||| |||| ||||||||   |||||||||||||||  |||||||||||| | | ||||||||||||  || || ||||||||| |||||||| |    
T  43442388 ttataattttaatcaatatcaaaa--tttatataaaatatcgtttgtaatttacacgtaaaatttctataaaacattgttgataatctacacacgttagc 43442291  T
Q  154 gtaat 158  Q
    |||||    
T  43442290 gtaat 43442286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 2707139 - 2707171
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  2707139 agcgcagtagaaaaagcggacagacgggcacgg 2707171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 25330926 - 25330896
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcac 44  Q
    |||||||||||||||||||||||||||||||    
T  25330926 agcgcagtagaaaaagcggacagacgggcac 25330896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 29406694 - 29406724
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcac 44  Q
    |||||||||||||||||||||||||||||||    
T  29406694 agcgcagtagaaaaagcggacagacgggcac 29406724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 4552519 - 4552580
Alignment:
Q  65 atctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaat 126  Q
    |||||||| ||| | |||||||||||||||  |||||||||||| | | |||||||||||||    
T  4552519 atctatattaaaaaatttatataaaatatcgtttgtaatttacacggaaaatttctataaat 4552580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 45073858 - 45073826
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||| ||||||||||||||||||||||||    
T  45073858 agcgcagtggaaaaagcggacagacgggcacgg 45073826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 22793219 - 22793129
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    |||||||||||| |||||||||||||   || ||||||||||||  |||||||||||| | | |||||||||||| |||||| |||||||||    
T  22793219 tacttataattttaatctatatcaaaatattgatataaaatatcgtttgtaatttacacgta-aatttctataaaatatcgttgataatcta 22793129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 8848134 - 8848102
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  8848134 agcgcagtagaaaaagcggacagacgggcacgg 8848102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 19383001 - 19383033
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  19383001 agcgcagtagaaaaagcggacagacgggcacgg 19383033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 13548392 - 13548363
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggca 43  Q
    ||||||||||||||||||||||||||||||    
T  13548392 agcgcagtagaaaaagcggacagacgggca 13548363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 17724584 - 17724613
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggca 43  Q
    ||||||||||||||||||||||||||||||    
T  17724584 agcgcagtagaaaaagcggacagacgggca 17724613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 2666148 - 2666180
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||||| |||||||||||||||||    
T  2666148 agcgcagtagaaaaaacggacagacgggcacgg 2666180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 15907097 - 15907129
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  15907097 agcgcagtagaaagagcggacagacgggcacgg 15907129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 18670242 - 18670270
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggc 42  Q
    |||||||||||||||||||||||||||||    
T  18670242 agcgcagtagaaaaagcggacagacgggc 18670270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 18691789 - 18691757
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||| ||||||||    
T  18691789 agcgcagtagaaaaagcggacagatgggcacgg 18691757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 19214835 - 19214803
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||| |||||||||||||||||||||||||||    
T  19214835 agcgcggtagaaaaagcggacagacgggcacgg 19214803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 21393430 - 21393462
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  21393430 agcgcagtagaaagagcggacagacgggcacgg 21393462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 23160783 - 23160815
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  23160783 agcgcagtagaaagagcggacagacgggcacgg 23160815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 30592131 - 30592167
Alignment:
Q  170 aaagatgagcacgtgagtccccgtcttttcactagtt 206  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  30592131 aaagaggagcacgtgagtacccgtcttttcactagtt 30592167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 31569362 - 31569330
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  31569362 agcgcagtagaaagagcggacagacgggcacgg 31569330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 32616952 - 32616920
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||| ||||||||||||||||||||||||||||    
T  32616952 agcgtagtagaaaaagcggacagacgggcacgg 32616920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 33299984 - 33299880
Alignment:
Q  54 ttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaac 153  Q
    |||||||||  |||||||||||| | |||||||||||| ||  |||||||||||| | | ||||| |||||| || ||| |||||||||||  ||||| |    
T  33299984 ttataatttggatctatatcaaaaattttatataaaatgtcgtttgtaatttacacgtaaaatttttataaaataacgttgataatctatatgcgttagc 33299885  T
Q  154 gtaat 158  Q
    |||||    
T  33299884 gtaat 33299880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 11876355 - 11876265
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    ||||||| |||| ||| ||||| |||||||| ||||||||||||  ||| |||||||| ||| |||||||||||  | |||| |||||||||    
T  11876355 tacttatcattttaatttatataaaagagtt-atataaaatatcgtttgcaatttacacgcaaaatttctataatatttcgttgataatcta 11876265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 11891362 - 11891272
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatcta 142  Q
    ||||||| |||| ||| ||||| |||||||| ||||||||||||  ||| |||||||| ||| |||||||||||  | |||| |||||||||    
T  11891362 tacttatcattttaatttatataaaagagtt-atataaaatatcgtttgcaatttacacgcaaaatttctataatatttcgttgataatcta 11891272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 29037944 - 29037886
Alignment:
Q  51 tacttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacat 109  Q
    |||||||||| ||||||||||||||| |  |||||||||||||   |||||||||||||    
T  29037944 tacttataatgtcaatctatatcaaaaaaattatataaaatattgtttgtaatttacat 29037886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 38745093 - 38745019
Alignment:
Q  81 ttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaacgt 155  Q
    |||||| |||||||  |||||||||||| ||| ||||||||||||||||| | | ||||||| || | |||||||    
T  38745093 ttatattaaatatcgtttgtaatttacacgcaaaatttctataaattatctttggtaatctacacgcattaacgt 38745019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 12701659 - 12701755
Alignment:
Q  54 ttataatttcaatctatatcaaagagtttatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgtta 151  Q
    ||||| ||| ||| ||||||||| | |||||||||||||| | || ||| ||||| ||| | |||||||||| |||||| |||||||| ||| |||||    
T  12701659 ttatatttttaatatatatcaaaaa-tttatataaaatataatttataaattacacgcaaactttctataaaatatcgttgataatctgtacgcgtta 12701755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 23126938 - 23126967
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggca 43  Q
    ||||||||||||||||||||||||||||||    
T  23126938 agcgcagtagaaaaagcggacagacgggca 23126967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 8213514 - 8213546
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  8213514 agcgcagtagaaagagcggacagacgggcacgg 8213546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 21349452 - 21349420
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  21349452 agcgcagtagaaagagcggacagacgggcacgg 21349420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 23120576 - 23120544
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||| ||||||||    
T  23120576 agcgcagtagaaaaagcggacagatgggcacgg 23120544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 31445473 - 31445549
Alignment:
Q  82 tatataaaatatcagttgtaatttacatgcagaatttctataaattatcgtagataatctatacacgttaacgtaat 158  Q
    |||||||||||||  |||||||||||| |   |||||||||||| ||||||  |||||||| |||| ||| ||||||    
T  31445473 tatataaaatatcgtttgtaatttacacgttaaatttctataaaatatcgttaataatctacacactttagcgtaat 31445549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 793 - 825
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  793 agcgcagtagaaaaagcggacagacgggcacgg 825  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 46338 - 46306
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||||||    
T  46338 agcgcagtagaaaaagcggacagacgggcacgg 46306  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 32284 - 32314
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcac 44  Q
    |||||||||||||||||||||||||||||||    
T  32284 agcgcagtagaaaaagcggacagacgggcac 32314  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 8992 - 8960
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  8992 agcgcagtagaaagagcggacagacgggcacgg 8960  T

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Target: scaffold0553 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 6603 - 6571
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||| ||||    
T  6603 agcgcagtagaaaaagcggacagacgggtacgg 6571  T

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Target: scaffold0422 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 10391 - 10419
Alignment:
Q  18 cagtagaaaaagcggacagacgggcacgg 46  Q
    |||||||||||||||||||||||||||||    
T  10391 cagtagaaaaagcggacagacgggcacgg 10419  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 42477 - 42509
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    |||||| ||||||||||||||||||||||||||    
T  42477 agcgcactagaaaaagcggacagacgggcacgg 42509  T

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Target: scaffold0077 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 52542 - 52574
Alignment:
Q  14 agcgcagtagaaaaagcggacagacgggcacgg 46  Q
    ||||||||||||| |||||||||||||||||||    
T  52542 agcgcagtagaaagagcggacagacgggcacgg 52574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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