View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_high_27 (Length: 390)

Name: NF14713_high_27
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_high_27
NF14713_high_27
[»] chr2 (1 HSPs)
chr2 (1-385)||(10790756-10791145)
[»] chr1 (3 HSPs)
chr1 (2-385)||(25874943-25875329)
chr1 (61-382)||(4011301-4011627)
chr1 (2-49)||(4011253-4011298)
[»] chr7 (2 HSPs)
chr7 (61-382)||(35346909-35347235)
chr7 (2-49)||(35346861-35346906)
[»] chr6 (2 HSPs)
chr6 (61-382)||(2273967-2274293)
chr6 (2-49)||(2273919-2273964)
[»] chr5 (2 HSPs)
chr5 (61-382)||(39345457-39345783)
chr5 (2-49)||(39345409-39345454)


Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 10791145 - 10790756
Alignment:
Q  1 ctgtcaaaacccatatcagttatgtttcactttgattgtcattcgattatggatgatcgtagtgctgaatcgctcttgcactgcattgtttgaacattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  ||||    
T  10791145 ctgtcaaaacccatatcagttatgtttcactttgattgtcattcgattatggatgattgtagtgctgagtcgctcttgcactgcattgtttgaaggttat 10791046  T
Q  101 cttacatagtaatgcttattttagtttaatgatatctccgtattac---catgctaactaatgcgaannnnnnn-aatacgcaactccattggatccaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||        |||||||||||| ||||||||||||    
T  10791045 cttacatagtaatgcttattttagtttaatgatatctccgtattactaccatgctaactgatgcgaattttttttaatacgcaactcgattggatccaaa 10790946  T
Q  197 tccgttcactgatctcgataaatatgtaatcgaa-ctcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttct 295  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10790945 tccgttcactgatctcgataaatatgtaaacgaaactcagggtgaaatatcgaacatacaccattggttttcatgttaatgatgtgtgtgtgtactttct 10790846  T
Q  296 ttctctttgatctttcattatagttttgttcttttttaatgatgctaacattccacagtcatataggatgttgtgttattgcctcctatg 385  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10790845 ttctctttgatctttcattatatttttgttcttttttaatgatgctaacatttcacagtcatataggatgttgtgttattgcctcctatg 10790756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 2 - 385
Target Start/End: Original strand, 25874943 - 25875329
Alignment:
Q  2 tgtcaaaacccatatcagttatgtttcactttgattgtcattcgattatggatgatcgtagtgctgaatcgctcttgcactgcattgtttgaacattatc 101  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  25874943 tgtcaaaacccatatcagttatgtttcagtttgattgtcattcgattatggatgatcgtagtgctgaatcgctcttgcactgcattgtttgaaggttatc 25875042  T
Q  102 ttacatagtaatgcttattttagtttaatgatatctccgtattac---catgctaactaatgcgaannnnnnn--aatacgcaactccattggatccaaa 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||          | |||||||||||||||||||||||    
T  25875043 ttacatagtaatgcttattttagtttaatgatatctccgtattactaccatgctaactgatgcgattttttttttagtacgcaactccattggatccaaa 25875142  T
Q  197 tccgttcactgatctcgataaatatgtaatcgaactcagggtgaaatatcgaacatacgccattggttttcatgttaatgatgtgtgtgtgtactttctt 296  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  25875143 tccgttcactgatctcgataaatatgtaaacgaactcaaggtgaaatatcgaacatacgccattggttttcatgttaatga--tgtgtgtgtactttctt 25875240  T
Q  297 tctctttgatctttcattatagttttgttcttttttaatgatgctaacattccacagtcatataggatgttgtgttattgcctcctatg 385  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  25875241 tctctttgatctttcattatatttttgttcttttttaatgatgctaacatttcacagtcatataggatgttgtgttattacctcctatg 25875329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 61 - 382
Target Start/End: Original strand, 4011301 - 4011627
Alignment:
Q  61 agtgctgaatcgctcttgcactgcattgtttgaacattatcttacatagtaatgcttattttagtttaatgatatctccgtattac---catgctaacta 157  Q
    ||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||   ||||||||||     
T  4011301 agtgctgaatcgctcttgcactgcattgtttgaaggttatcttaattagtaatgcttattttagtttaatgatatctccgtattactaccatgctaactg 4011400  T
Q  158 atgcgaannnnnnn--aatacgcaactccattggatccaaatccgttcactgatctcgataaatatgtaatcgaactcagggtgaaatatcgaacatacg 255  Q
    ||||||          ||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  4011401 atgcgatattttttttaatgcacaactccattggatcaaaatccgttcactgatctcgataaatatgtaaacgaactcagggtgaaatatcaaacatacg 4011500  T
Q  256 ccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattatagttttgttcttttttaatgatgctaacattccacagtc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||    
T  4011501 ccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattatatttttgttcttttttaatgatgctaacatttcactgtc 4011600  T
Q  356 atataggatgttgtgttattgcctcct 382  Q
    |||||||||||||||||||||||||||    
T  4011601 atataggatgttgtgttattgcctcct 4011627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 4011253 - 4011298
Alignment:
Q  2 tgtcaaaacccatatcagttatgtttcactttgattgtcattcgatta 49  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||||    
T  4011253 tgtcaaaacccatatcagt--tgtttcactctgattgccattcgatta 4011298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 61 - 382
Target Start/End: Original strand, 35346909 - 35347235
Alignment:
Q  61 agtgctgaatcgctcttgcactgcattgtttgaacattatcttacatagtaatgcttattttagtttaatgatatctccgtattac---catgctaacta 157  Q
    ||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||   ||||||||||     
T  35346909 agtgctgaatcgctcttgcactgcattgtttgaaggttatcttaattagtaatgcttattttagtttaatgatatctccgtattactaccatgctaactg 35347008  T
Q  158 atgcgaannnnnnn--aatacgcaactccattggatccaaatccgttcactgatctcgataaatatgtaatcgaactcagggtgaaatatcgaacatacg 255  Q
    ||||||          ||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35347009 atgcgatattttttttaatgcacaactccattggatcaaaatccgttcactgatctcgataaatatgtaaacgaactcagggtgaaatatcgaacatacg 35347108  T
Q  256 ccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattatagttttgttcttttttaatgatgctaacattccacagtc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||    
T  35347109 ccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattatatttttgttcttttttaatgatgctaacatttcactgtc 35347208  T
Q  356 atataggatgttgtgttattgcctcct 382  Q
    |||||||||||||||||||||||||||    
T  35347209 atataggatgttgtgttattgcctcct 35347235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 35346861 - 35346906
Alignment:
Q  2 tgtcaaaacccatatcagttatgtttcactttgattgtcattcgatta 49  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||||    
T  35346861 tgtcaaaacccatatcagt--tgtttcactctgattgccattcgatta 35346906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 61 - 382
Target Start/End: Original strand, 2273967 - 2274293
Alignment:
Q  61 agtgctgaatcgctcttgcactgcattgtttgaacattatcttacatagtaatgcttattttagtttaatgatatctccgtattac---catgctaacta 157  Q
    ||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||   ||||||||||     
T  2273967 agtgctgaatcgctcttgcactgcattgtttgaaggttatcttaattagtaatgcttattttagtttaatgatatctccgtattactaccatgctaactg 2274066  T
Q  158 atgcgaannnnnnn--aatacgcaactccattggatccaaatccgttcactgatctcgataaatatgtaatcgaactcagggtgaaatatcgaacatacg 255  Q
    ||||||          ||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2274067 atgcgatattttttttaatgcacaactccattggatcaaaatccgttcactgatctcgataaatatgtaaacgaactcagggtgaaatatcgaacatacg 2274166  T
Q  256 ccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattatagttttgttcttttttaatgatgctaacattccacagtc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||    
T  2274167 ccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattatatttttgttcttttttaatgatgctaacatttcactgtc 2274266  T
Q  356 atataggatgttgtgttattgcctcct 382  Q
    |||||||||||||||||||||||||||    
T  2274267 atataggatgttgtgttattgcctcct 2274293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 2273919 - 2273964
Alignment:
Q  2 tgtcaaaacccatatcagttatgtttcactttgattgtcattcgatta 49  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||||    
T  2273919 tgtcaaaacccatatcagt--tgtttcactctgattgccattcgatta 2273964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 61 - 382
Target Start/End: Original strand, 39345457 - 39345783
Alignment:
Q  61 agtgctgaatcgctcttgcactgcattgtttgaacattatcttacatagtaatgcttattttagtttaatgatatctccgtattac---catgctaacta 157  Q
    ||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||   ||||||||||     
T  39345457 agtgctgaatcgctcttgcactgcattgtttgaaggttatcttaattagtaatgcttattttagtttaatgatatctccgtattactaccatgctaactg 39345556  T
Q  158 atgcgaannnnnnn--aatacgcaactccattggatccaaatccgttcactgatctcgataaatatgtaatcgaactcagggtgaaatatcgaacatacg 255  Q
    ||||||          ||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  39345557 atgcgatattttttttaatgcacaactccattggatcaaaatccgttcactgatctcgataaatatgtaaacgaactcagggtgaaatgtcgaacatacg 39345656  T
Q  256 ccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattatagttttgttcttttttaatgatgctaacattccacagtc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||    
T  39345657 ccattggttttcatgttaatgatgtgtgtgtgtactttctttctctttgatctttcattatatttttgttcttttttaatgatgctaacatttcactgtc 39345756  T
Q  356 atataggatgttgtgttattgcctcct 382  Q
    |||||||||||||||||||||||||||    
T  39345757 atataggatgttgtgttattgcctcct 39345783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 39345409 - 39345454
Alignment:
Q  2 tgtcaaaacccatatcagttatgtttcactttgattgtcattcgatta 49  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||||    
T  39345409 tgtcaaaacccatatcagt--tgtttcactctgattgccattcgatta 39345454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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