View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_high_33 (Length: 355)
Name: NF14713_high_33
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_high_33 |
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| [»] scaffold0027 (3 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 118471 - 118572
Alignment:
| Q |
35 |
ctgtaaccaattaaatggttcataaactaaaccacatatttaaaaaagttcagttaaccaaacttaaacgctgtatttgaactgcttttataactctcta |
134 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
118471 |
ctgtaaccaattaaatggttcataaactgaaccacatatttaaaaaagttcagttaaccaaacttaaacgctgtatttgaactgcttttataactcccta |
118570 |
T |
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| Q |
135 |
tt |
136 |
Q |
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|| |
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| T |
118571 |
tt |
118572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 118684 - 118757
Alignment:
| Q |
264 |
ccggctagacctgcaacaccggtaacttctgtttggtctcatcactggacgccgccggatatggtggtggagct |
337 |
Q |
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| T |
118684 |
ccggctagacctgcaacaccggtaacttctgtttggtctcatcactggacgccgccggatatggtggtggagct |
118757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 118635 - 118685
Alignment:
| Q |
199 |
ctcgcatggttacttctccccagagttttcatcgacatctttcgtttcgcc |
249 |
Q |
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|||| ||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
118635 |
ctcgtatggttacttctctccagagttttcatcaacatctttcgtttcgcc |
118685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 3427156 - 3427223
Alignment:
| Q |
36 |
tgtaaccaattaaatggttcataaactaaaccacatatttaaaaaagttcagttaaccaaacttaaac |
103 |
Q |
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| T |
3427156 |
tgtaatcaattaaatggttcatgaactgaaccacatatttaaaaaagttcaattaaccaaacttaaac |
3427223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 17240447 - 17240504
Alignment:
| Q |
44 |
attaaatggttcataaactaaaccacatatttaaaaaagttcagttaaccaaacttaa |
101 |
Q |
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| T |
17240447 |
attaaatggttcgtaaactgaaccataaatttaaacaaattcagttaaccaaacttaa |
17240504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 5898872 - 5898928
Alignment:
| Q |
45 |
ttaaatggttcataaactaaaccacatatttaaaaaagttcagttaaccaaacttaa |
101 |
Q |
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| T |
5898872 |
ttaaatggttcataaattgaaccacaaatttaaatcaattcagttaaccaaacttaa |
5898928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 26065039 - 26064972
Alignment:
| Q |
36 |
tgtaaccaattaaatggttcataaactaaaccacatatttaaaaaagttcagttaaccaaacttaaac |
103 |
Q |
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|||||||| ||| ||||||||| |||| ||||||||||| |||||| |||||||||| |||| |||| |
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| T |
26065039 |
tgtaaccacttatatggttcatgaactgaaccacatattcaaaaaaaatcagttaaccgaactgaaac |
26064972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 6842246 - 6842177
Alignment:
| Q |
35 |
ctgtaaccaattaaatggttcataaactaaaccacatatttaaaaaagt-tcagttaaccaaacttaaac |
103 |
Q |
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| T |
6842246 |
ctgtaaccttttatatggtttatgaattgaaccacatatttaaaaaaatatcagttaaccaaacttaaac |
6842177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 8802875 - 8802932
Alignment:
| Q |
44 |
attaaatggttcataaactaaaccacatatttaaaaaagttcagttaaccaaacttaa |
101 |
Q |
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||||| ||||||||||||||||||||| |||||| | || |||||||||||||||| |
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| T |
8802875 |
attaattggttcataaactaaaccacaattttaaatcaattaagttaaccaaacttaa |
8802932 |
T |
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