View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14713_high_35 (Length: 348)
Name: NF14713_high_35
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_high_35 |
 | |
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| [»] scaffold0327 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 8166183 - 8165965
Alignment:
| Q |
14 |
tttagaactcaatctaaaatattttgatacttaatctgaaatattttgatattcaatctaaaaatattttagtatataaactgaagttttttgtacttga |
113 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
8166183 |
tttagtactcaatctaaaatattttgatacttaatctaaaatattttgatattcaatctaaaaatattttagtatataaaatgaagttttttgtacttga |
8166084 |
T |
|
| Q |
114 |
tctaacacacatgttccttgtcgcccaagtttctcatggatgagttgttaattctctctttgaacagaattcgtgtaaattatttcacacatcaaagaat |
213 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
8166083 |
tctaacacacatgttccttgtcgcccaagtttctcatggatgagttgttaattctctctttgaacagaatttgtgtaaattatttcacacatcaaagaat |
8165984 |
T |
|
| Q |
214 |
tctattaagttattgagaa |
232 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
8165983 |
tctattaagttattgagaa |
8165965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 8165899 - 8165849
Alignment:
| Q |
298 |
gtccccccacatcaaagaattagattgagttgtcgagaattcttttttgct |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8165899 |
gtccccccacatcaaagaattagattgagttgtcgagaattcttttttgct |
8165849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 40941159 - 40941109
Alignment:
| Q |
20 |
actcaatctaaaatattttgatacttaatctgaaatattttgatattcaat |
70 |
Q |
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|||||||||||||||||||| |||| ||| ||||||||||||| ||||||| |
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|
| T |
40941159 |
actcaatctaaaatattttggtactcaatttgaaatattttgacattcaat |
40941109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 19391264 - 19391337
Alignment:
| Q |
1 |
caatccaaaatactttagaactcaatctaaaatattttgatacttaatctgaaatattttgatattcaatctaa |
74 |
Q |
| |
|
||||| |||||| |||||||| ||||||| ||||||||| || |||| |||||||||||||| |||||||| |
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|
| T |
19391264 |
caatctaaaatattttagaacgcaatctagaatattttggaacacaatccgaaatattttgataggcaatctaa |
19391337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 30857340 - 30857275
Alignment:
| Q |
7 |
aaaatactttagaactcaatctaaaatattttgatacttaatctgaaatattttgatattcaatct |
72 |
Q |
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|
|||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||| |
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|
| T |
30857340 |
aaaatattttagaacacaatctaaaatattttgatacttaatctgaaattttttaatactcaatct |
30857275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 43520308 - 43520360
Alignment:
| Q |
8 |
aaatactttagaactcaatctaaaatattttgatacttaatctgaaatatttt |
60 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
43520308 |
aaatattttagtactcaatctaaaatattttgatacttgatttgaaatatttt |
43520360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0327 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0327
Description:
Target: scaffold0327; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 8762 - 8829
Alignment:
| Q |
7 |
aaaatactttagaactcaatctaaaatattttgatacttaatctgaaatattttgatattcaatctaa |
74 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| || ||||| ||||| |||||||| |||||||| |
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|
| T |
8762 |
aaaatattttagaacgcaatctaaaatattttggaacataatccgaaattttttgataggcaatctaa |
8829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 27074000 - 27073933
Alignment:
| Q |
7 |
aaaatactttagaactcaatctaaaatattttgatacttaatctgaaatattttgatattcaatctaa |
74 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||| || ||||| |||||||||||||| |||||||| |
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|
| T |
27074000 |
aaaatattttagaacgcaatctagaatattttggaacataatccgaaatattttgataggcaatctaa |
27073933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 17327949 - 17327882
Alignment:
| Q |
7 |
aaaatactttagaactcaatctaaaatattttgatacttaatctgaaatattttgatattcaatctaa |
74 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||| || |||||||||||||||| ||| |||||||| |
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|
| T |
17327949 |
aaaatatttttgaacgcaatctaaaatattttggaacagaatctgaaatattttggtatgcaatctaa |
17327882 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 26199425 - 26199358
Alignment:
| Q |
7 |
aaaatactttagaactcaatctaaaatattttgatacttaatctgaaatattttgatattcaatctaa |
74 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| || |||| |||||||||||||| |||||||| |
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|
| T |
26199425 |
aaaatattttagaacgcaatctaaaatattttggaacacaatccgaaatattttgataggcaatctaa |
26199358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 39036748 - 39036806
Alignment:
| Q |
28 |
taaaatattttgatacttaatctgaaatattttgatattcaatctaaaaatattttagta |
87 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| |||||| || ||||||||||| |
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|
| T |
39036748 |
taaaatattttggaacttaatctgaaatattttggtatgcaatct-aatatattttagta |
39036806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 19725082 - 19725136
Alignment:
| Q |
7 |
aaaatactttagaactcaatctaaaatattttgatacttaatctgaaatattttg |
61 |
Q |
| |
|
|||||| |||||||| ||||||| |||| ||||| ||| |||||||||||||||| |
|
|
| T |
19725082 |
aaaatattttagaacgcaatctagaataatttgaaactcaatctgaaatattttg |
19725136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 19727283 - 19727229
Alignment:
| Q |
7 |
aaaatactttagaactcaatctaaaatattttgatacttaatctgaaatattttg |
61 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
19727283 |
aaaatattttagaacgtaatctaaaatattttgaaacacaatctgaaatattttg |
19727229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34561305 - 34561249
Alignment:
| Q |
1 |
caatccaaaatactttagaactcaatctaaaatattttgatacttaatctgaaatat |
57 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||| ||| | ||||||||||| |
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|
| T |
34561305 |
caatctaaaatattttagaacgcaatctaaaatattttagtacatgatctgaaatat |
34561249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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