View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_high_46 (Length: 295)

Name: NF14713_high_46
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_high_46
NF14713_high_46
[»] chr2 (1 HSPs)
chr2 (1-295)||(15029615-15029922)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 15029922 - 15029615
Alignment:
Q  1 tcaagtgtagaatctataccaactgttaagcgctttaccttgaaggaatcagtgatagatggtgtttttaagatcaagggatgcnnnnnnncatgttgat 100  Q
    |||||||||||||||||||||||| |||| | |||||||||||| |||| ||| |||| || ||||||||||||||||||||||       |||||||||    
T  15029922 tcaagtgtagaatctataccaactcttaaactctttaccttgaaagaatgagttataggtgttgtttttaagatcaagggatgcaaaaaaacatgttgat 15029823  T
Q  101 atggttttatgtgagatactagctgcaccacttcactgtaatctttatgataagcactaga---------------attatgatgtataaattcatctca 185  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||    
T  15029822 atggtt--atgtgagatactagctgcaccacttcactgtaatctttatgataagcactagagttttatctctattgattatgatgtataaattcatctca 15029725  T
Q  186 tcaaagttcactaagatggagtaaattgttaattatttatttcaaatcatcatgttataatataaaagaattttcctctgttatatatgattacattttg 285  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15029724 tcaaaattcactaagatggagtaaattgttaattatttatttcaaatcatcatgttataatataaaagaattttcctctgttatatatgattacattttg 15029625  T
Q  286 acaaatcttt 295  Q
    ||||||||||    
T  15029624 acaaatcttt 15029615  T

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