View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_high_53 (Length: 267)
Name: NF14713_high_53
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 32568486 - 32568718
Alignment:
| Q |
19 |
aatagtatcgtagtatctgcatatagtgcatacaagcaaaatataaggaatgataaatatgatgattctttgacttttgagggatatgtgaagagagcaa |
118 |
Q |
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| T |
32568486 |
aatagtattgtagtatctgcatatagtgcatacaagcaaaatataaggtatgataaatatgatgattctttgacttttgagggatatgtgaagagagcaa |
32568585 |
T |
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| Q |
119 |
ggaaagatattatagagctataccaaagtatcatgaccatggagcaatttgtgaagcagagatatttagaattaagagagaagctaaagttcttgctact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32568586 |
ggaaagatattatagagctataccaaagtatcatgaccatggagcaatttgtgaagcagagatatttagaattaagagagaagctaaagttcttgctact |
32568685 |
T |
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| Q |
219 |
taccttatacatccacatgccaaaatctttcat |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32568686 |
taccttatacatccacatgccaaaatctttcat |
32568718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 32645914 - 32645685
Alignment:
| Q |
19 |
aatagtatcgtagtatctgcatatagtgcatacaagcaaaatataaggaatgataaatatgatgattctttgacttttgagggatatgtgaagagagcaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32645914 |
aatagtatcgtagtatctgcatatagtgcatacaagcaaaatatagggtatgataaatatgatgattctttgacttttgagggatatgtgaagagagcaa |
32645815 |
T |
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| Q |
119 |
ggaaagatattatagagctataccaaagtatcatgaccatggagcaatttgtgaagcagagatatttagaattaagagagaagctaaagttcttgctact |
218 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||| |
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| T |
32645814 |
ggaaagagattatggagctataccaaagtatcatgaccatggagcaatttgtgaagcagagatttggagaattaagtgagaagctaaagttcttgataca |
32645715 |
T |
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| Q |
219 |
taccttatacatccacatgccaaaatcttt |
248 |
Q |
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||| |||| || |||||||||||||||||| |
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| T |
32645714 |
tacgttatgcacccacatgccaaaatcttt |
32645685 |
T |
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