View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_high_54 (Length: 263)
Name: NF14713_high_54
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 45972055 - 45971827
Alignment:
| Q |
16 |
atggtactaaacaatcacattgtaatattgtaagannnnnnnncactagacactgtaatattgtaagttaatctctgaaattataaaaggttnnnnnnnn |
115 |
Q |
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| T |
45972055 |
atggtactaaacaatcacattgtaatattgtaagattttttt-cactagacactgtaatattgtaagttaatctctgaaattataaaaggttaaaaaaaa |
45971957 |
T |
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| Q |
116 |
nnnnnnntgatattttgacatccaaactttgatgtcaaatacagtgttttttaaagtattttttaagaaaaatgctctttggcatgagacgaaaacaaac |
215 |
Q |
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| T |
45971956 |
aaaaaaatgatattttgacatccaaactttgatgttaaatacagtgtttttttaagtattttttaagaaaaatgctctttggcatgagacgaaaacaaag |
45971857 |
T |
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| Q |
216 |
aaacttatcacatcagtccgatttttagtc |
245 |
Q |
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| T |
45971856 |
aaacttatcacatcagtccgatttttagtc |
45971827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 10313938 - 10313905
Alignment:
| Q |
123 |
tgatattttgacatccaaactttgatgtcaaata |
156 |
Q |
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| T |
10313938 |
tgatattttgacatcaaaactttgatgtcaaata |
10313905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 49107731 - 49107695
Alignment:
| Q |
123 |
tgatattttgacatccaaactttgatgtcaaatacag |
159 |
Q |
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| T |
49107731 |
tgatattttaacatcaaaactttgatgtcaaatacag |
49107695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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