View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_high_56 (Length: 248)

Name: NF14713_high_56
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_high_56
NF14713_high_56
[»] scaffold0083 (2 HSPs)
scaffold0083 (82-230)||(50856-51005)
scaffold0083 (1-50)||(51003-51052)
[»] chr5 (4 HSPs)
chr5 (82-230)||(26793277-26793436)
chr5 (82-230)||(26818793-26818952)
chr5 (1-50)||(26793228-26793279)
chr5 (1-50)||(26818744-26818795)
[»] chr3 (15 HSPs)
chr3 (82-230)||(10214694-10214853)
chr3 (82-230)||(10223435-10223594)
chr3 (82-230)||(10103758-10103917)
chr3 (154-230)||(10123641-10123716)
chr3 (154-230)||(10180295-10180370)
chr3 (154-230)||(10256410-10256485)
chr3 (1-50)||(10103709-10103760)
chr3 (1-50)||(10214645-10214696)
chr3 (1-50)||(10223386-10223437)
chr3 (11-50)||(10076227-10076266)
chr3 (11-50)||(10439062-10439101)
chr3 (12-50)||(10018949-10018987)
chr3 (82-123)||(10018985-10019026)
chr3 (82-123)||(10180184-10180225)
chr3 (82-123)||(10256299-10256340)


Alignment Details
Target: scaffold0083 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 51005 - 50856
Alignment:
Q  82 ttagtaaatgc-tatatttttcagcaatgatatgctcatcagtagaaaagttatcgacataatctctagtacattatttttaattttgaacacagatgat 180  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51005 ttagtaaatgcatatatttttcagcaatgatatgctcatcagtaaaaaagttatcaacataatctctagtacattatttttaattttgaacacagatgat 50906  T
Q  181 aagaaaaatgacaacatgatacatttattttagtatatgagaggacttta 230  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  50905 aagaaaaatgacaacatgatacatttattttcgtatatgagaggagttta 50856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 51052 - 51003
Alignment:
Q  1 ttcttagaaagtgtgttttgaaatatcatttatattcaaaccttcattta 50  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51052 ttcttagaaagtgtgttttgaaatatcatttacattcaaaccttcattta 51003  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 26793277 - 26793436
Alignment:
Q  82 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 171  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  26793277 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 26793376  T
Q  172 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggacttta 230  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  26793377 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggacttta 26793436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 26818793 - 26818952
Alignment:
Q  82 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 171  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  26818793 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 26818892  T
Q  172 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggacttta 230  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  26818893 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggacttta 26818952  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26793228 - 26793279
Alignment:
Q  1 ttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 50  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  26793228 ttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 26793279  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26818744 - 26818795
Alignment:
Q  1 ttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 50  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  26818744 ttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 26818795  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 10214694 - 10214853
Alignment:
Q  82 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 171  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  10214694 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 10214793  T
Q  172 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggacttta 230  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  10214794 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggacttta 10214853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 10223435 - 10223594
Alignment:
Q  82 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 171  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  10223435 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 10223534  T
Q  172 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggacttta 230  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  10223535 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggacttta 10223594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 10103758 - 10103917
Alignment:
Q  82 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 171  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  10103758 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 10103857  T
Q  172 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggacttta 230  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  10103858 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggaattta 10103917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 10123641 - 10123716
Alignment:
Q  154 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggacttta 230  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| |||||||||||| |||||||||||||||||||    
T  10123641 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggacttta 10123716  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 10180295 - 10180370
Alignment:
Q  154 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggacttta 230  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| |||||||||||| |||||||||||||||||||    
T  10180295 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggacttta 10180370  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 10256410 - 10256485
Alignment:
Q  154 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggacttta 230  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| ||| |||||||| |||||||||||||||||||    
T  10256410 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacgtttatttttagtatatgagaggacttta 10256485  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10103709 - 10103760
Alignment:
Q  1 ttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 50  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  10103709 ttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 10103760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10214645 - 10214696
Alignment:
Q  1 ttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 50  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  10214645 ttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 10214696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10223386 - 10223437
Alignment:
Q  1 ttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 50  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  10223386 ttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 10223437  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 10076227 - 10076266
Alignment:
Q  11 gtgtgttttgaaatatcatttatattcaaaccttcattta 50  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10076227 gtgtgttttgaaatatcatttacattcaaaccttcattta 10076266  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 10439101 - 10439062
Alignment:
Q  11 gtgtgttttgaaatatcatttatattcaaaccttcattta 50  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  10439101 gtgtgttttgaaatatcatttacgttcaaaccttcattta 10439062  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 10018949 - 10018987
Alignment:
Q  12 tgtgttttgaaatatcatttatattcaaaccttcattta 50  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  10018949 tgtgttttgaaatatcatttacgttcaaaccttcattta 10018987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 10018985 - 10019026
Alignment:
Q  82 ttagtaaatgctatatttttcagcaatgatatgctcatcagt 123  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10018985 ttagtaaatgctataattttcagtaatgatatactcatcagt 10019026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 10180184 - 10180225
Alignment:
Q  82 ttagtaaatgctatatttttcagcaatgatatgctcatcagt 123  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10180184 ttagtaaatgctataattttcagtaatgatatactcatcagt 10180225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 10256299 - 10256340
Alignment:
Q  82 ttagtaaatgctatatttttcagcaatgatatgctcatcagt 123  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10256299 ttagtaaatgctataattttcagtaatgatatactcatcagt 10256340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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