View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_high_59 (Length: 245)

Name: NF14713_high_59
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_high_59
NF14713_high_59
[»] chr1 (13 HSPs)
chr1 (1-228)||(1815332-1815559)
chr1 (106-228)||(1843474-1843595)
chr1 (106-228)||(1857485-1857606)
chr1 (106-228)||(1869083-1869204)
chr1 (46-106)||(19326856-19326916)
chr1 (43-101)||(19330311-19330370)
chr1 (1-43)||(1486646-1486688)
chr1 (1-47)||(6427550-6427596)
chr1 (1-43)||(17778628-17778670)
chr1 (1-46)||(31694638-31694683)
chr1 (5-45)||(16812635-16812675)
chr1 (1-45)||(18556385-18556429)
chr1 (46-105)||(40524962-40525022)
[»] chr8 (11 HSPs)
chr8 (48-107)||(11686012-11686071)
chr8 (46-106)||(44206277-44206337)
chr8 (46-104)||(19177405-19177463)
chr8 (48-103)||(31343660-31343715)
chr8 (48-106)||(4863904-4863962)
chr8 (1-45)||(15816058-15816102)
chr8 (1-46)||(8343042-8343087)
chr8 (1-46)||(8343402-8343447)
chr8 (1-45)||(13436910-13436954)
chr8 (2-46)||(27213601-27213645)
chr8 (1-45)||(36450694-36450738)
[»] chr4 (7 HSPs)
chr4 (46-106)||(27442661-27442721)
chr4 (1-46)||(11596296-11596341)
chr4 (1-46)||(18513174-18513219)
chr4 (1-45)||(8423658-8423702)
chr4 (1-45)||(23292926-23292970)
chr4 (1-45)||(24343588-24343632)
chr4 (1-45)||(37203327-37203371)
[»] scaffold0655 (2 HSPs)
scaffold0655 (46-107)||(4205-4266)
scaffold0655 (46-106)||(6261-6321)
[»] chr7 (6 HSPs)
chr7 (2-45)||(21568561-21568604)
chr7 (1-45)||(598283-598327)
chr7 (1-46)||(5409770-5409815)
chr7 (1-45)||(21880227-21880271)
chr7 (1-45)||(38804489-38804533)
chr7 (1-41)||(40287306-40287346)
[»] chr2 (7 HSPs)
chr2 (2-45)||(12748743-12748786)
chr2 (46-107)||(39959414-39959475)
chr2 (1-45)||(30404790-30404834)
chr2 (2-45)||(11223793-11223836)
chr2 (1-46)||(30335491-30335536)
chr2 (1-46)||(37419829-37419874)
chr2 (1-45)||(44635568-44635612)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-45)||(44454-44498)
[»] scaffold0003 (2 HSPs)
scaffold0003 (2-46)||(236913-236957)
scaffold0003 (1-45)||(241680-241724)
[»] chr6 (6 HSPs)
chr6 (1-45)||(7378054-7378098)
chr6 (5-45)||(32839571-32839611)
chr6 (6-45)||(10770607-10770646)
chr6 (1-42)||(9025448-9025489)
chr6 (2-43)||(26178620-26178661)
chr6 (1-44)||(6665287-6665331)
[»] chr3 (7 HSPs)
chr3 (1-45)||(27505326-27505370)
chr3 (2-45)||(12083959-12084002)
chr3 (1-44)||(25211605-25211648)
chr3 (1-46)||(41961578-41961623)
chr3 (1-46)||(49651715-49651760)
chr3 (1-45)||(11610584-11610628)
chr3 (1-45)||(34185052-34185096)
[»] chr5 (4 HSPs)
chr5 (1-46)||(38464312-38464357)
chr5 (1-46)||(43564956-43565001)
chr5 (3-47)||(14873599-14873643)
chr5 (1-45)||(19820328-19820372)
[»] scaffold0168 (1 HSPs)
scaffold0168 (10-46)||(21372-21408)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 1815332 - 1815559
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcataggatacaacataattgcaggaaaatcattataactaattatgacaaatattctatt 100  Q
    ||||||||||||| |||||||||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||    
T  1815332 cgacaccgggacacgcctaatctgaggagtgaccgtgattcataggatacaacataattgcaggaaaatcattataactaatttcgacaaatattctttt 1815431  T
Q  101 ctatcatcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatcc 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1815432 ctatcatcaccaaattcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatcc 1815531  T
Q  201 attaacctcattccctccaattccatag 228  Q
    ||||||||||||||||||||||||||||    
T  1815532 attaacctcattccctccaattccatag 1815559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 1843595 - 1843474
Alignment:
Q  106 atcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaa 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||   |||  | || |||||||||||||||| ||||||    
T  1843595 atcaccaggttcataaatgctagatgatgattcatgaagcaagtacct-actctcctctacatttgagtcatctttgatccaagagtgcttattcattaa 1843497  T
Q  206 cctcattccctccaattccatag 228  Q
    |||||||||||||||||||||||    
T  1843496 cctcattccctccaattccatag 1843474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 1857606 - 1857485
Alignment:
Q  106 atcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaa 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||   |||  | || |||||||||||||||| ||||||    
T  1857606 atcaccaggttcataaatgctagatgatgattcatgaagcaagtacct-actctcctctacatttgagtcatctttgatccaagagtgcttattcattaa 1857508  T
Q  206 cctcattccctccaattccatag 228  Q
    |||||||||||||||||||||||    
T  1857507 cctcattccctccaattccatag 1857485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 1869204 - 1869083
Alignment:
Q  106 atcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaa 205  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| |  | |||||||||||||||   |||  |||| |||||||||||||||| ||||||    
T  1869204 atcaccaggttcataaaagctagatgatgattcatgaagcaagaaccg-actctcctctacatttgagtcatcattgatccaagagtgcttattcattaa 1869106  T
Q  206 cctcattccctccaattccatag 228  Q
    |||||||||||||||||||||||    
T  1869105 cctcattccctccaattccatag 1869083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 19326916 - 19326856
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  19326916 gatacaacataattacaggaaaataattataactaattatgactaatattctattctatca 19326856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 19330370 - 19330311
Alignment:
Q  43 taggatacaacataattgcagg-aaaatcattataactaattatgacaaatattctattc 101  Q
    ||||||||||||||||| |||| ||||| |||||| ||||||||||| |||||| |||||    
T  19330370 taggatacaacataattacagggaaaataattatacctaattatgactaatattttattc 19330311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1486688 - 1486646
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcat 43  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||    
T  1486688 cgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6427550 - 6427596
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagga 47  Q
    ||||||||||||| |||||||||||  |||||| |||||||||||||    
T  6427550 cgacaccgggacacgcctaatctgatgagtgtccgtgcttcatagga 6427596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17778628 - 17778670
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcat 43  Q
    |||||||||||||||||||||| |||||||||  |||||||||    
T  17778628 cgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31694683 - 31694638
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||| ||| |||||||||||| |||||| ||||||||||||    
T  31694683 cgacaccggaacacgcctaatctgaggagtgtccgtgcttcatagg 31694638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 16812635 - 16812675
Alignment:
Q  5 accgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||| |||||||||||| |||||| |||||||||||    
T  16812635 accgggacacgcctaatctgaggagtgtccgtgcttcatag 16812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18556429 - 18556385
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||| |||||| |||||||| |||||||||| |||||||||||    
T  18556429 cgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 40524962 - 40525022
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgac-aaatattctattctatc 105  Q
    ||||||||||||||  |||||||| ||||||   ||||||||| |||||||||||||||||    
T  40524962 gatacaacataattataggaaaataattatagtcaattatgacaaaatattctattctatc 40525022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 11686012 - 11686071
Alignment:
Q  48 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 107  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  11686012 tacaacataattacagggaaatcattaaaactaattatgacaaatattctattctatcat 11686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 44206277 - 44206337
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||    
T  44206277 gatacaacataattacaggaaaataattataactaattatgactaatactctattctatca 44206337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 19177463 - 19177405
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctat 104  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||||||    
T  19177463 gatacaacataattagaggaaaataattataactaattatgactaatattctattctat 19177405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 31343715 - 31343660
Alignment:
Q  48 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattcta 103  Q
    |||||||||||| | || ||||||||| |||||||||||||||||||| |||||||    
T  31343715 tacaacataattacggggaaatcattaaaactaattatgacaaatattatattcta 31343660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 4863904 - 4863962
Alignment:
Q  48 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||| ||||||| |||| ||||||||| |||||||||||  ||||||||||||||||||    
T  4863904 tacagcataattacagggaaatcattaaaactaattatggtaaatattctattctatca 4863962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15816102 - 15816058
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||    
T  15816102 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8343042 - 8343087
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||| |||||||| ||  |||||||||||||||||||    
T  8343042 cgacaccgggacacgcctaatccgaagagtgtctgtgcttcatagg 8343087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8343402 - 8343447
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||| |||||||| ||  |||||||||||||||||||    
T  8343402 cgacaccgggacacgcctaatccgaagagtgtctgtgcttcatagg 8343447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13436954 - 13436910
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| ||||||||  || ||||||||||||||||||    
T  13436954 cgacaccgggacacgcctaatccaaggagtgtctgtgcttcatag 13436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 27213601 - 27213645
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||||||||| | |||||| |||||||||| ||||||||||||    
T  27213601 gacaccgggacacggctaatccgagaagtgtccgtgcttcatagg 27213645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36450738 - 36450694
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||| ||||| |||||||| ||| ||||||||||||||||||    
T  36450738 cgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 27442661 - 27442721
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  27442661 gatacagcataattacaggaaaataattataactaattatgactaatattctattctatca 27442721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11596341 - 11596296
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||| ||||||| |||||||||||| |||||| ||||||||||||    
T  11596341 cgacatcgggacacgcctaatctgaggagtgtccgtgcttcatagg 11596296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18513219 - 18513174
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||| ||||| |||||||||||| |||||| ||||||||||||    
T  18513219 cgacaccaggacacgcctaatctgaggagtgtccgtgcttcatagg 18513174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8423702 - 8423658
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| |||||||||| |||| ||||||    
T  8423702 cgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23292970 - 23292926
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| ||| |||||| |||||||||||    
T  23292970 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24343588 - 24343632
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| ||||| |||||| |||||| |||||||||||    
T  24343588 cgacaccgggacacgcctattctgaggagtgtccgtgcttcatag 24343632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37203327 - 37203371
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| | |||||| |||||||||| |||||||||||    
T  37203327 cgacaccgggacacgtctaatccgagaagtgtccgtgcttcatag 37203371  T

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Target: scaffold0655 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 4205 - 4266
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 107  Q
    |||||||||||||| |||| |||| |||||| | ||||||||||||||||||||||||||||    
T  4205 gatacaacataattacagggaaataattatagccaattatgacaaatattctattctatcat 4266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 6261 - 6321
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||||||||||||| |||| |||| |||||| | |||||| ||||||||||||||||||||    
T  6261 gatacaacataattacagggaaataattatagccaattattacaaatattctattctatca 6321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 21568604 - 21568561
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||    
T  21568604 gacaccgggacatgcttaatctgaggagtgtctgtgcttcatag 21568561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 598283 - 598327
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||    
T  598283 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5409815 - 5409770
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||| |||||||| ||| |||||| ||||||||||||    
T  5409815 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 5409770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21880227 - 21880271
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||| ||||| |||||||| |||||||||| |||||||||||    
T  21880227 cgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38804533 - 38804489
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||| ||||||||||||||||| ||| ||||| ||||||||||||    
T  38804533 cgacgccgggacatgcctaatccgaggagtgtatgtgcttcatag 38804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40287346 - 40287306
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttc 41  Q
    |||||||||||||||||||||| ||| |||||| |||||||    
T  40287346 cgacaccgggacatgcctaatccgaggagtgtccgtgcttc 40287306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 12748743 - 12748786
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  12748743 gacaccgggacatgcctaatttgaggagtgtctgtgcttcatag 12748786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 39959475 - 39959414
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 107  Q
    |||||| ||||||| ||| | ||||||||||| || | ||||||||||||||||||||||||    
T  39959475 gatacatcataattacagaataatcattataattagtcatgacaaatattctattctatcat 39959414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30404834 - 30404790
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||| ||||||||||||||||||||| || ||||||||||||    
T  30404834 cgacaccaggacatgcctaatctgagaagcgtttgtgcttcatag 30404790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 11223836 - 11223793
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||||||||| |||||||||||| |||||| |||||||||||    
T  11223836 gacaccgggacacgcctaatctgaggagtgtccgtgcttcatag 11223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30335491 - 30335536
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||| |||| |||||||||||||||| ||| |||||||||||||    
T  30335491 cgacactgggatatgcctaatctgagaaatgtatgtgcttcatagg 30335536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37419829 - 37419874
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||| |||||||| ||| |||||| ||||||||||||    
T  37419829 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 37419874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44635568 - 44635612
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||||| |||| |||||||||||| |||||| |||||||||||    
T  44635568 cgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44498 - 44454
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||    
T  44498 cgacactgggacatggttaatctgagaagtgtctgtgcttcatag 44454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 236957 - 236913
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||    
T  236957 gacaccgggacacacctaatctgaggagtgtctgtgcttcatagg 236913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 241680 - 241724
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||    
T  241680 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7378054 - 7378098
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||    
T  7378054 cgacaccgggacacggctaatctgagaagtgtccgtgcttcatag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32839611 - 32839571
Alignment:
Q  5 accgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  32839611 accgggacacgcctaatccgagaagtgtctgtgcttcatag 32839571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 10770646 - 10770607
Alignment:
Q  6 ccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  10770646 ccgggacatgcctaatctgaggagtgtccgtgcttcatag 10770607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9025489 - 9025448
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttca 42  Q
    ||||||||||||| |||||||| |||||||||| ||||||||    
T  9025489 cgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 26178661 - 26178620
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcat 43  Q
    |||||||||||| |||||||| ||| ||||||||||||||||    
T  26178661 gacaccgggacacgcctaatcggaggagtgtctgtgcttcat 26178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6665287 - 6665331
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtc-tgtgcttcata 44  Q
    |||||| ||||||||||||||| |||||||||| |||||||||||    
T  6665287 cgacacggggacatgcctaatccgagaagtgtcttgtgcttcata 6665331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27505326 - 27505370
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||||||||||||||||||| ||| |||||| |||||||||||    
T  27505326 cgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 12083959 - 12084002
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||    
T  12083959 gacacctggacgtgcctaatctgaggagtgtctgtgcttcatag 12084002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25211605 - 25211648
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcata 44  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||    
T  25211605 cgacaccaggacacgcctaatctgagaagtgtttgtgcttcata 25211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41961623 - 41961578
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||| |||||| |||||||| |||||||||| ||||||||||||    
T  41961623 cgacactgggacacgcctaatccgagaagtgtccgtgcttcatagg 41961578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49651760 - 49651715
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||||||||||  ||||||| |||||||||| ||||||||||||    
T  49651760 cgacaccgggacacacctaatccgagaagtgtccgtgcttcatagg 49651715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11610584 - 11610628
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||| ||||||| |||||||||||| |||||| |||||||||||    
T  11610584 cgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34185096 - 34185052
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| ||| |||||| |||||||||||    
T  34185096 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38464357 - 38464312
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||||||||||  ||||||| ||| |||||||||||||||||||    
T  38464357 cgacaccgggacacacctaatccgaggagtgtctgtgcttcatagg 38464312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43564956 - 43565001
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||| |||||||| |||||||| |||||||||| ||||||||||||    
T  43564956 cgacgccgggacacgcctaatccgagaagtgtccgtgcttcatagg 43565001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 14873599 - 14873643
Alignment:
Q  3 acaccgggacatgcctaatctgagaagtgtctgtgcttcatagga 47  Q
    ||||||||||| |||||||| ||| |||||| |||||||||||||    
T  14873599 acaccgggacacgcctaatccgaggagtgtccgtgcttcatagga 14873643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19820372 - 19820328
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| ||| |||||| |||||||||||    
T  19820372 cgacaccgggacacgcctaatcagaggagtgtccgtgcttcatag 19820328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 21372 - 21408
Alignment:
Q  10 gacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||| |||||||| |||||||||||||||||||||||    
T  21372 gacacgcctaatccgagaagtgtctgtgcttcatagg 21408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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