View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_1 (Length: 1008)
Name: NF14713_low_1
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 509 - 993
Target Start/End: Original strand, 40800732 - 40801217
Alignment:
| Q |
509 |
gaggaagccacttcttctaacggaacgagttacattcaatatttcttgatgattgaagaact-tttttgtattctatttcctatttactcttcttggtta |
607 |
Q |
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||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
40800732 |
gaggaagccacttcttctaacggtacgaattacatgcaatatttcttgatgattgaagaactgtttttgtattctatttcctttttactcttcttggtta |
40800831 |
T |
|
| Q |
608 |
attcaaattcagatataatgggaaatgttccgcattgatagagaagctcctcatatataggatgattgccaaatttttctccatattatctctcggcctc |
707 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
40800832 |
atacaaattcagatataatgggaaatgttccgcattgatagagaagctcctcatatataggatgactgccaaatttttctccatattatctctcggtctc |
40800931 |
T |
|
| Q |
708 |
tttctaatccttttatgttgttgtttgcatgtgatttgagtccttattcgataattgtcccaaagggtgaaaggaaacgacgaagaggaaaggaagatgg |
807 |
Q |
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| T |
40800932 |
tttctaatccttttatgttgttgtttgcatgtgatttgagtccttattccataattgtcgcaaagggtgaaaggaaacgacgaagaggaaaggaagatgg |
40801031 |
T |
|
| Q |
808 |
ttacatattagaaaatatggttttaagatgtttgaagttttcaggtatgtttgatgctcaataaatatcaaacttcctttaacataaaaggtggttatgt |
907 |
Q |
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||||||||||| ||||||||||| |||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
40801032 |
ttacatattagtaaatatggtttaaagatgcttgaagttttcaagtatatttgatgctcaataaatatctaacttcctttaacataaaaggtggttacgt |
40801131 |
T |
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| Q |
908 |
atcagtaattgggaaatgtataagaatatttacttagataatattttatttgatttctccaaatttggtaagttagcatcactgtt |
993 |
Q |
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| T |
40801132 |
atcagtaattgggaaatgtataagaatatttacttagataatattttatttgatttctccaaatttggtaagttagcatcactgtt |
40801217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 178 - 505
Target Start/End: Original strand, 40799391 - 40799719
Alignment:
| Q |
178 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttagcaaatttgaaaggccttttc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40799391 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttaggaaatttgaaaggccttttc |
40799490 |
T |
|
| Q |
278 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcaaaaagttatgcctcg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
40799491 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcagaaagttatgcgtcg |
40799590 |
T |
|
| Q |
378 |
ttggcaatttccttttaaatttccatcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttg-tcttaaaaatcatat |
476 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
40799591 |
ttggcaatttccttttaaatttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttgcttttaaaaatcatat |
40799690 |
T |
|
| Q |
477 |
cccttctttgttgtgttaattattgttcc |
505 |
Q |
| |
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|||||||||||||||||||| ||||||| |
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| T |
40799691 |
tccttctttgttgtgttaattgttgttcc |
40799719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 40799224 - 40799328
Alignment:
| Q |
11 |
gagatgaagaaggggaaaagggaggaagaagatggaacaatttgatgtagcctattttcctccaccattaattaaagtgtttaaggtaaatgcaattata |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40799224 |
gagatgaagaaggggaaaagggaggaagaagatggaacaacttgatgtagcctattttcctcgaccattaattaaagtgtttaaggtaaatgcaattata |
40799323 |
T |
|
| Q |
111 |
taggc |
115 |
Q |
| |
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||||| |
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| T |
40799324 |
taggc |
40799328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 907 - 990
Target Start/End: Complemental strand, 18701846 - 18701763
Alignment:
| Q |
907 |
tatcagtaattgggaaatgtataagaatatttacttagataatattttatttgatttctccaaatttggtaagttagcatcact |
990 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18701846 |
tatcagtaattgggaaatgtataagaatatttacttagataatattttatttgatttctccaaatttggtaagttagcatcact |
18701763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 397 - 652
Target Start/End: Complemental strand, 2249574 - 2249317
Alignment:
| Q |
397 |
tttccatcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttgtcttaaa-aatcatatcccttctttgttgtgttaa |
495 |
Q |
| |
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||||| |||||||| | |||| | ||||||| |||||| ||||||||||| |||||||| || || |||| || ||| |||||||||||| |||| |
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| T |
2249574 |
tttccttcaatttaacattaccatatttactataaacacttgcatacacgtgttccttatcttagttgtaaagaagtgtatttcttctttgttgttttaa |
2249475 |
T |
|
| Q |
496 |
ttattgttccaccgaggaagccacttcttctaacggaacgagttacattcaatatttcttgatgattgaagaacttttt-tgtattctatttcctattta |
594 |
Q |
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|| |||||||| ||||||||||||||| | | || || ||| || |||| |||||| |||||||||| ||| ||| |||| |||||||| ||| || |
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| T |
2249474 |
tttttgttccataaaggaagccacttcttggagcataatgaattatatgcaatttttcttcatgattgaagcactatttctgtactctatttcttatcta |
2249375 |
T |
|
| Q |
595 |
ctcttcttggttaattcaaattcagatataatgggaaatgttccgcattgatagagaa |
652 |
Q |
| |
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||||||| ||||||| |||||| |||||||||| |||||||||||||| ||| |||| |
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| T |
2249374 |
ctcttctcggttaatataaattctgatataatggaaaatgttccgcatttatatagaa |
2249317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 717 - 830
Target Start/End: Complemental strand, 2249080 - 2248968
Alignment:
| Q |
717 |
cttttatgttgttgtttgcatgtgatttgagtccttattcgataattgtcccaaagggtgaaaggaaacgacgaagaggaaaggaagatggttacatatt |
816 |
Q |
| |
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||||||||||||| | | ||||| ||||||||||| ||| |||||||| ||||||||||||||| || ||||||||||||||||| ||||||||| |
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| T |
2249080 |
cttttatgttgttttctccatgtcatttgagtcctaatttcataattgttgcaaagggtgaaaggagac-acgaagaggaaaggaaggcagttacatatc |
2248982 |
T |
|
| Q |
817 |
agaaaatatggttt |
830 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
2248981 |
agtaaatatggttt |
2248968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 856 - 915
Target Start/End: Complemental strand, 2248971 - 2248911
Alignment:
| Q |
856 |
gtttgatgctcaataaatatcaaac-ttcctttaacataaaaggtggttatgtatcagtaa |
915 |
Q |
| |
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||||||||||||||||||||| ||| ||| |||||| |||||||||||| |||||||||| |
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| T |
2248971 |
gtttgatgctcaataaatatctaactttcgtttaacgaaaaaggtggttacgtatcagtaa |
2248911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 717 - 850
Target Start/End: Original strand, 9813613 - 9813743
Alignment:
| Q |
717 |
cttttatgttgttgtttgcatgtgatttgagtccttattcgataattgtcccaaagggtgaaaggaaacgacgaagaggaaaggaagatggttacatatt |
816 |
Q |
| |
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|||||||| |||| | | ||||| ||||||||||| || |||||||| |||| ||||||||||||| | |||| |||||||| |||||||||| |
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| T |
9813613 |
cttttatgctgttttctccatgtcatttgagtcctagttacataattgttgcaaacggtgaaaggaaacaa---agagaaaaggaaggcggttacatatc |
9813709 |
T |
|
| Q |
817 |
agaaaatatggttttaagatgtttgaagttttca |
850 |
Q |
| |
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| ||||||||||| |||||| |||||||||||| |
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| T |
9813710 |
aataaatatggtttgaagatgcttgaagttttca |
9813743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 466 - 524
Target Start/End: Complemental strand, 51035649 - 51035591
Alignment:
| Q |
466 |
aaaaatcatatcccttctttgttgtgttaattattgttccaccgaggaagccacttctt |
524 |
Q |
| |
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||||| ||||| |||||||||| ||||||||| |||||||| |||||||||||||||| |
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| T |
51035649 |
aaaaaacatattccttctttgtagtgttaatttttgttccatagaggaagccacttctt |
51035591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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