View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_10 (Length: 602)
Name: NF14713_low_10
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 590
Target Start/End: Original strand, 39031693 - 39032265
Alignment:
| Q |
18 |
attggataaatcaaattcctcttcctctagttgcatttttcctgcctcaatcttgcttgtgtccagtatagaatttaacagtcctaagattgtaacaaaa |
117 |
Q |
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| T |
39031693 |
attggataaatcaaattcctcttcctctagttgcatttttcctgcctcaatcttgcttgtgtccagtatagaatttaacagtcctaagattgtaacaaaa |
39031792 |
T |
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| Q |
118 |
taaaaaatgagttaatgataccataaattatagacaaaaatcaatcaaaccatttgtaacaacattggtagcatgaacctatgatgatttaccaagcaaa |
217 |
Q |
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| T |
39031793 |
taaaaaatgagttaatgataccataaattatagacaaaaatcaatcaaaccatttgtaacaacattggtagcatgaacctatgatgatttaccaagcaaa |
39031892 |
T |
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| Q |
218 |
tcttgggcacaattatccatttgttttaaattggtctccaattctgaacttggtttcaaattggtctccaattttgaatcagtaacaactaatttagaag |
317 |
Q |
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| T |
39031893 |
tcttgggcacaattatccatttgttttaaattggtctccaattctgaacttggtttcaaattggtctccaattttgaattagtaacaactaatttagaag |
39031992 |
T |
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| Q |
318 |
acatctcaatcaaaccaataaggccagcaagataagcacgaagatcatggctagcagtagcaaaagcaaggctcttattggtattctttctctcagcttg |
417 |
Q |
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| T |
39031993 |
acatttcaatcaaaccaataaggccagcaagataagcacgaagatcatggctagcagtagcaaaagcaaggctcttattggtattctttctctcagcttg |
39032092 |
T |
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| Q |
418 |
ttctgtggcttccttttgttgcattagtgatgcacacaaatgcatttctctctttgtcactccaagattcaagaatagaaaactcaagatagcaataaat |
517 |
Q |
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| T |
39032093 |
ttctgtggcttccttttgttgcatgagtgatgcacacaaatgcatttctctctttgtcactccaagattcaagaatagaaaactcaagatagcaataaat |
39032192 |
T |
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| Q |
518 |
atcatcaccatcattacaatcaagagtgtcaatccctttcctttatgacttggattaaagatgagagatccat |
590 |
Q |
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| T |
39032193 |
atcatcaccatcattacaatcaagagtgtcaatccctttcctttatgacttggattaaagatgagagatccat |
39032265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 40897394 - 40897478
Alignment:
| Q |
22 |
gataaatcaaattcctcttcctctagttgcatttttcctgcctcaatcttgcttgtgtccagtatagaatttaacagtcctaaga |
106 |
Q |
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| T |
40897394 |
gataaatcaaattcttcttccacaagttccatttttcctacctcaattttgcttgtgtcaagtatagagttcaatagtcctaaga |
40897478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 469
Target Start/End: Original strand, 40897759 - 40897872
Alignment:
| Q |
356 |
cgaagatcatggctagcagtagcaaaagcaaggctcttattggtattctttctctcagcttgttctgtggcttccttttgttgcattagtgatgcacaca |
455 |
Q |
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| T |
40897759 |
cgaacatcatggctagcgctagcaacggcgaggctcttgttcatattttttctctcagcttggtgagtggcctctttttgtttgataagtgaggcacaca |
40897858 |
T |
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| Q |
456 |
aatgcatttctctc |
469 |
Q |
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|||||||||||||| |
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| T |
40897859 |
aatgcatttctctc |
40897872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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