View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_11 (Length: 578)
Name: NF14713_low_11
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_11 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 578
Target Start/End: Original strand, 27079297 - 27079857
Alignment:
| Q |
18 |
aactttacccccattgatccctttaacccttccaaccatgacatttttgcctgatccatttacactctcagttgatcgaacagttacatcacggcccaaa |
117 |
Q |
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| T |
27079297 |
aactttacccccattgatccctttaacccttccaaccatgacatttttgcccgatccatttacactctcagttgatcgaacagttacatcatggcccaaa |
27079396 |
T |
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| Q |
118 |
actgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatgctcggtgccctctcacactcacctaacgagtccacta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
27079397 |
actgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatactcggtgccctctcacactcacccaatgagtccacta |
27079496 |
T |
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| Q |
218 |
tcatcttatccattgaggaattctcagacaccttaaagacttgcttcaactcattcaactttgaagatgcaaagggtaatttggtcaaaatggtacgtgg |
317 |
Q |
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| T |
27079497 |
tcatcttatccatcgaggaattctcagacaccttaaaaacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggtacgtgg |
27079596 |
T |
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| Q |
318 |
tagaaacgatctttgtggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggttgaacc |
417 |
Q |
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| T |
27079597 |
taaaaacgaccttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacc |
27079696 |
T |
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| Q |
418 |
cannnnnnngccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccggcaaaagaaataccttttttatcgtaatcct |
517 |
Q |
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| T |
27079697 |
catttttttgccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccagcaaaagaaataccttttttatcgtaatcct |
27079796 |
T |
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| Q |
518 |
taaacgtgttattaacaccataacctttgaatgttaccttatgatccgcatcagcaccttt |
578 |
Q |
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| T |
27079797 |
taaacgtgttattaacaccataacctttgaatgttatcttatgatccgcatcagcaccttt |
27079857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 27065580 - 27066090
Alignment:
| Q |
18 |
aactttacccccattgatccctttaacccttccaaccatgacatttttgcctgatccatttacactctcagttgatcgaacagttacatcacggcccaaa |
117 |
Q |
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|||||| || ||||| ||||| ||||| | || |||||||||| ||||| | ||||||||| ||||||| || |||||||| ||| | |||||| |
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| T |
27065580 |
aacttttccaccatttatccccttaactttacccaccatgacatccttgcccgccccatttacattctcagtggaccgaacagtaacactgtgacccaaa |
27065679 |
T |
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| Q |
118 |
actgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatgctcggtgccctctcacactcacctaacgagtccacta |
217 |
Q |
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|| ||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||| | ||||| |||||||| ||||||| |||| ||||| | |
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| T |
27065680 |
acagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccacca |
27065779 |
T |
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| Q |
218 |
tcatcttatccattgaggaattctcagacaccttaaagacttgcttcaactcattcaactttgaagatgcaaagggtaatttggtcaaaatggtacgtgg |
317 |
Q |
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| T |
27065780 |
tcatcttattcatcgaagaattctcggacaccttgaaaacttgcttcatctcattcaacttagaagatgcaaatggcaatttggtcaaaatggaacgagg |
27065879 |
T |
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| Q |
318 |
tagaaacgatctttgtggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggttgaacc |
417 |
Q |
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| T |
27065880 |
caaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaacc |
27065979 |
T |
|
| Q |
418 |
cannnnnnngccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccggcaaaagaaataccttttttatcgtaatcct |
517 |
Q |
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||||||||| |||| ||||| | ||| || ||||||| || || | ||| |||||| ||||||||||||||||| || || ||||||| |
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| T |
27065980 |
atgttttttgccaaactaccactatcactgagagagttagttgaagtagtag---ttttattataactagcaaaagaaatacctttcttgtcataatcct |
27066076 |
T |
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| Q |
518 |
taaacgtgttatta |
531 |
Q |
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|||| || |||||| |
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| T |
27066077 |
taaatgtattatta |
27066090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 73 - 417
Target Start/End: Original strand, 27053193 - 27053537
Alignment:
| Q |
73 |
ccatttacactctcagttgatcgaacagttacatcacggcccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtct |
172 |
Q |
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||||||||| ||||||| || ||||| || |||| | ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| ||| |
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| T |
27053193 |
ccatttacattctcagtggaccgaaccgtcacattgctacccaaaatagaagttgcaaagtcaatcatgtcctcaagcgaacctacacaacgcttgatct |
27053292 |
T |
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| Q |
173 |
cacccatgctcggtgccctctcacactcacctaacgagtccactatcatcttatccattgaggaattctcagacaccttaaagacttgcttcaactcatt |
272 |
Q |
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| T |
27053293 |
cacctttacttggcgctctttcacactcactcaatgagtccactatcatcttttccataaaggaattttcagacaccttgaaaacttgcttcatattgtt |
27053392 |
T |
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| Q |
273 |
caactttgaagatgcaaagggtaatttggtcaaaatggtacgtggtagaaacgatctttgtggtaatttatccttaatatccggcataggcataaccacc |
372 |
Q |
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| T |
27053393 |
caacttagaagatgcaaagggcaatttgatcaaaatggaacgtggcaaaaacgacctaggtggtaacttatcccttgtatctggcataggcataacagtc |
27053492 |
T |
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| Q |
373 |
ccttgtttcaacatcttttcccggaaaaacttaccaggttgaacc |
417 |
Q |
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|||| ||||||||| |||| |||||||||||||| |||| |||| |
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| T |
27053493 |
ccttccttcaacatcctttcgcggaaaaacttacctggttcaacc |
27053537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 14866364 - 14866300
Alignment:
| Q |
112 |
cccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacc |
176 |
Q |
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|||||||| |||||||||||||| ||||||||||||| || |||||||| | ||||||||||| |
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| T |
14866364 |
cccaaaaccgaagttgcaaagtcgatcatatcctcaatagacccaacacatctttttgtctcacc |
14866300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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