View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_13 (Length: 567)
Name: NF14713_low_13
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 336 - 490
Target Start/End: Complemental strand, 34647536 - 34647382
Alignment:
| Q |
336 |
tagaaatgcaagatcattaattcttcaatgtatgaatgatgtgccaaaaaattcccctggtgtccattatattgtcctgttgccggttgttactacttgt |
435 |
Q |
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| T |
34647536 |
tagaattgcaagatcattaattcttcaatgtatgaatgatgtgcccaaaaattcccctggtgtccattatattgtcctgttgccggttgttactacttgt |
34647437 |
T |
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| Q |
436 |
gttggttatgctcgtgtcaatcgagtcacacagggcctcttaattgtagccatcg |
490 |
Q |
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| T |
34647436 |
gttggttatgctcgtgtcaatcgagtcacacagggcctcttaattgtagccatcg |
34647382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 34647712 - 34647603
Alignment:
| Q |
158 |
cactttacttgatttagtggtattgatttgagatttgtgagtatgttcctcctcgattcttagatttgattatcttctgtatcaatttgaatggtttaat |
257 |
Q |
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| T |
34647712 |
cactttgcttgatttagtggtattgacttgagatctgtgagtatgttcctctttgattcttagatttgattctcttttgtgtcaatttaaatggtctaat |
34647613 |
T |
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| Q |
258 |
ttaacttctt |
267 |
Q |
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| T |
34647612 |
ttaacttctt |
34647603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 34647854 - 34647782
Alignment:
| Q |
18 |
gtttggccggtgcttacgtggtttcacttgagtgcttgaagatt--gggcattgatgaaatttacgtatcgac |
88 |
Q |
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| T |
34647854 |
gtttggccggtgcttacgtggtttcacttgagtgcttgaagatttgtggcattgatgaaatttatgtatcgac |
34647782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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