View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_17 (Length: 499)
Name: NF14713_low_17
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Original strand, 35203494 - 35203967
Alignment:
| Q |
10 |
aggagcagagagatcatgtcagctgcaaatatactactactcttcaaccctgtcagttttatgtttcaaggttgagaatttgggctgagaggaacctcgg |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35203494 |
aggatcagagagatcatgtcagctgcaaatatactactactcttcaaccctgtcagttttatgtttcaaggttgagaatttgggctgagaggaacctcgg |
35203593 |
T |
|
| Q |
110 |
atcctcttctctcatcatgtgtgtaactgtgtcagtgaagctcagatcaaaggatatggtgcaagtacttccattaccatagttgattgattgagtaagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35203594 |
atcctcttctctcatcatgtgtgtaactgtgtcagtgaagctcagatcaaaggatatggtgcaagtacttccattaccatagttgattgattgagtaagt |
35203693 |
T |
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| Q |
210 |
tggtctttttcattaattttgtaatgtgtatatgcaatgacatatcctttattttctttactttttctaatgtattattgtgattagttagggtggtgaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35203694 |
tggtctttttcattaattttgtaatgtgtatatgcaatgacatatcctttattttctttactttttctaatgtattattgtgattagttagggtggtgag |
35203793 |
T |
|
| Q |
310 |
gttgggggatttactcactatatgatgaaaagaaatctaatgtgttgatttcnnnnnnnngttaactttcttaacatttggaaggggttaggttatgaag |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35203794 |
gttgggggatttactcactatatgatgaaaagaaatctaatgtgttgatttc-tttttttgttaactttcttaacatttggaaggggttaggttatgaag |
35203892 |
T |
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| Q |
410 |
gttattgggggtataattgtggtatagaa---nnnnnnnnattaatattatttactttgattggtttggtatttg |
481 |
Q |
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| T |
35203893 |
gttattgggggtataattgtggtatagaagaggaggggggattaatattatttactttgattggtttggtatttg |
35203967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 352
Target Start/End: Complemental strand, 55859937 - 55859835
Alignment:
| Q |
250 |
catatcctttattttctttactttttctaatgtattattgtgattagttagggtggtgaagttgggggatttactcactatatgatgaaaagaaatctaa |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||| ||||||| ||||||| ||||| ||| |
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| T |
55859937 |
catatcctttattttctttactttttctaatgtattattgtaattacttagggtggtgaggttggtagatttacccactataagatgaaaggaaatttaa |
55859838 |
T |
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| Q |
350 |
tgt |
352 |
Q |
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||| |
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| T |
55859837 |
tgt |
55859835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 250 - 352
Target Start/End: Original strand, 29274630 - 29274732
Alignment:
| Q |
250 |
catatcctttattttctttactttttctaatgtattattgtgattagttagggtggtgaagttgggggatttactcactatatgatgaaaagaaatctaa |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||| ||||||| ||||| ||| |
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| T |
29274630 |
catatcctttattttctttactttttctaatgtattattgtaattacttagggtggtgaggttggtagatttactcactataagatgaaaggaaatttaa |
29274729 |
T |
|
| Q |
350 |
tgt |
352 |
Q |
| |
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||| |
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|
| T |
29274730 |
tgt |
29274732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 7414765 - 7414706
Alignment:
| Q |
60 |
tgtcagttttatgtttcaaggttgagaatttgggctgagaggaacctcggatcctcttct |
119 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||| |
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| T |
7414765 |
tgtcagttttatgtttcaaggttgaatattcgggctgagagggacctcagatcctcttct |
7414706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 29274812 - 29274869
Alignment:
| Q |
379 |
cttaacatttggaaggggttaggttatgaaggttattgggggtataattgtggtatagaa |
438 |
Q |
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||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| |
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| T |
29274812 |
cttaacatttggaaggg-ttaggttatgg-ggttattggatgtataattgtggtatagaa |
29274869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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