View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_19 (Length: 478)
Name: NF14713_low_19
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 93 - 462
Target Start/End: Complemental strand, 36153635 - 36153266
Alignment:
| Q |
93 |
ctcgatagaaatatcataattagataacttgtcggcaaacatgttgccctctttgaagatgtgagtaaacaagaatcgcatctggctagtaaaattgtta |
192 |
Q |
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| T |
36153635 |
ctcgatagaaatatcataattagataacttgtcggcaaacatgttgccctctttgaagatgtgagtaaacaagaatcgcatctggctagtaaaattgtta |
36153536 |
T |
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| Q |
193 |
cagttcagccatctattcaaaaacttcctaggaatcagagtactgttttttaaagcatcaaccatcaacgtataatcgcattcaagccataaattatgtc |
292 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36153535 |
cagttctgccatctattcaaaaacttccatggaatcagactactgttttttaaagcatcaaccatcaatgtataatcgcattcaagccataaattatgtc |
36153436 |
T |
|
| Q |
293 |
aaccattttgaaaacctgtttcaatagtaaaattagcactcataatttcagcgtnnnnnnngattataatgtgcaaaccaacattttagtctcggaaagt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36153435 |
aaccattttgaaaacctgtttcaatagtaaaattagcactcataatttcagcgtaaaaaaagattataatgtgcaaaccaacattttagtctcggaaagt |
36153336 |
T |
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| Q |
393 |
gtaactcattgtcaaattgatatcttaataagatgataatctaatcaaatcctcaactctttattatatt |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36153335 |
gtaactcattgtcaaattgatatcttaataagatgataatctaatcaaatcctcaactctttattatatt |
36153266 |
T |
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