View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_2 (Length: 766)
Name: NF14713_low_2
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 18 - 754
Target Start/End: Original strand, 23701235 - 23701974
Alignment:
| Q |
18 |
ctatattcctgttattgcaacactttgaactgaaattttacataatcttctttccttttattactcaacttctagatcgaaggaaaatcacaatgatgca |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
23701235 |
ctatattcctgttattggaacactttgaactgaaattttacataatcttctttccttttattactcaacttctagatgaaaggaaaatcacaatgacgca |
23701334 |
T |
|
| Q |
118 |
attgacatttgaaacatggagtcacaatgcaaacataatacaataaaagannnnnnnnnnnnnnnnngatataaaaacataattgtaaaactagattata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23701335 |
attgacatttgaaacatggagtcacaatgcaaacataatacaataaaagattttttattttatttttgatataaaaacataattgtaaaactagattata |
23701434 |
T |
|
| Q |
218 |
caattgcatatttgtctcgtctttcgtgcataannnnnnnatgaagccggatgcattaggtaagcaaatatatcaatttaattaccaaaattgataccat |
317 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23701435 |
caattgcatatctgtctcgtctttcgtgcataatttttttatgaagccggatgcattaggtaagaaaatatatcaatttaattaccaaaattgataccat |
23701534 |
T |
|
| Q |
318 |
tgatctccaaacaatccttcttgaatttacactcctacttataaatgattgatattacttgttttacactctaaacaatagtggtgttttggccttgaat |
417 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701535 |
tgatctccggacaatccttcttgaatttacactcctacttataaatgattgatattacttgttttacactctaaacaatagtggtgttttggccttgaat |
23701634 |
T |
|
| Q |
418 |
ttgattccttcttcttttagcctagatatcgtcatgtaaaggagattaacctggaattttcagatgttgaagacagacatctcatactaattaaagataa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701635 |
ttgattccttcttcttttagcctagatatcgtcatgtaaaggagattaaccttgaattttcagatgttgaagacagacatctcatactaattaaagataa |
23701734 |
T |
|
| Q |
518 |
ggtagtctattttctttagttatgtcttaatctattatcatatatctaaaaatgcagaagccggaactgtttatcattcattgcttgctgagtacttatg |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701735 |
ggtagtctattttctttagttatgtcttaatctattatcatatatctaaaaatgcagaagccggaactgtttatcattcattgcttgctgagtacttatg |
23701834 |
T |
|
| Q |
618 |
gttctgac---acaagaatattagataaagggggcaaccatagttgacaatgtttccacaaacattttatgatgtagaaatgtagaatatagattgaatg |
714 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701835 |
gttctgacattacaagaatattagataaagggggcaaccgtagttgacaatgtttccacaaacattttatgatgtagaaatgtagaatatagattgaatg |
23701934 |
T |
|
| Q |
715 |
tgattctgaccaaataatgttaagcatttctagtgttttc |
754 |
Q |
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| T |
23701935 |
tgattctgaccaaatcattttaagcatttttagtgttttc |
23701974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 525 - 762
Target Start/End: Complemental strand, 23664956 - 23664713
Alignment:
| Q |
525 |
tattttctttagttat---gtcttaatctattatcatatatctaaaaatgcagaagccggaactgtttatcattcattgcttgctgagtacttatggttc |
621 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23664956 |
tattttctttagttattatgtggtaatctattatcatatatctaaaaatgcagaagctggaactgtttatcattcattgcttgctgagtacttatggttc |
23664857 |
T |
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| Q |
622 |
tgaca---caagaatattagataaagggggcaaccatagttgacaatgtttccacaaacattttatgatgtagaaatgtagaatatagattgaatgtgat |
718 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23664856 |
tgacattacaagaatattagataaagggggcaaccatagttgacaatgtttccacaaacattttatgatgtagaaatgtagaatatagattgaatgtgat |
23664757 |
T |
|
| Q |
719 |
tctgaccaaataatgttaagcatttctagtgttttcattttctt |
762 |
Q |
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| T |
23664756 |
tctgaccaaataatgttaagcatttctagtgttttcattttctt |
23664713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 614 - 762
Target Start/End: Complemental strand, 23748464 - 23748313
Alignment:
| Q |
614 |
tatggttctgaca---caagaatattagataaagggggcaaccatagttgacaatgtttccacaaacattttatgatgtagaaatgtagaatatagattg |
710 |
Q |
| |
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||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||||| |||||| | |||||||| || | ||||||||||||||||| |
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| T |
23748464 |
tatggttctgacattacaataatattagataaagagggcaaccatagttgacgatgtttgcacaaatactttatgatatacacatgtagaatatagattg |
23748365 |
T |
|
| Q |
711 |
aatgtgattctgaccaaataatgttaagcatttctagtgttttcattttctt |
762 |
Q |
| |
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|||||||||||||| || |||| |||||||||||||||||||| ||| |||| |
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| T |
23748364 |
aatgtgattctgacgaagtaattttaagcatttctagtgttttgattctctt |
23748313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 399 - 521
Target Start/End: Complemental strand, 23748987 - 23748862
Alignment:
| Q |
399 |
tggtgttttggccttgaatttgattccttcttcttttagcctagatatcgtcatgtaaaggagattaacctggaattttc---agatgttgaagacagac |
495 |
Q |
| |
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||||||||||| || |||||||||| ||||||| | |||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||| || |
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| T |
23748987 |
tggtgttttggtctggaatttgattgcttcttcatgtagcctagatatcgccatgtaaaggagattaaccttgaatttgcacgagatgttgaagacgcac |
23748888 |
T |
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| Q |
496 |
atctcatactaattaaagataaggta |
521 |
Q |
| |
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|||||||||| ||||||||||||||| |
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| T |
23748887 |
atctcatacttattaaagataaggta |
23748862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 450 - 521
Target Start/End: Complemental strand, 23687432 - 23687358
Alignment:
| Q |
450 |
catgtaaaggagattaacctggaattttca---gatgttgaagacagacatctcatactaattaaagataaggta |
521 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||||| | |||||||||| ||||||||||||||| |
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| T |
23687432 |
catgtaaaggagattaacctggaatttgcaagagatgttgaagacacatatctcatacttattaaagataaggta |
23687358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 530 - 621
Target Start/End: Complemental strand, 23679834 - 23679747
Alignment:
| Q |
530 |
tctttagttatgtcttaatctattatcatatatctaaaaatgcagaagccggaactgtttatcattcattgcttgctgagtacttatggttc |
621 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||| ||||||| ||||||||| |
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|
| T |
23679834 |
tctttagttatttcttaatttattatcatatatctagaaatgcagaagctagaactgttta----ccattgcttactgagtatttatggttc |
23679747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 659 - 732
Target Start/End: Complemental strand, 23701132 - 23701059
Alignment:
| Q |
659 |
tgacaatgtttccacaaacattttatgatgtagaaatgtagaatatagattgaatgtgattctgaccaaataat |
732 |
Q |
| |
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|||||||||| |||||| | ||||| ||||||||||||| || |||||||||||||||||||| ||||||||| |
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| T |
23701132 |
tgacaatgttcgcacaaatactttataatgtagaaatgtataacatagattgaatgtgattctgtccaaataat |
23701059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 521
Target Start/End: Complemental strand, 23721490 - 23721417
Alignment:
| Q |
451 |
atgtaaaggagattaacctggaattttcag---atgttgaagacagacatctcatactaattaaagataaggta |
521 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
23721490 |
atgtaaaggagattaaccttgaatttgcaagaaatgttgaagacacacatctcatacttattaaagataaggta |
23721417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 521
Target Start/End: Complemental strand, 23693498 - 23693404
Alignment:
| Q |
430 |
tcttttagcctagatatcgtcatgtaaaggagattaacctggaattttc---agatgttgaagacagacatctcatactaattaaagataaggta |
521 |
Q |
| |
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|||| |||||||||||| | |||||||| ||||||||||| |||||| | |||||||||||||| ||||||||| | |||||||||| |||| |
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| T |
23693498 |
tcttgtagcctagatatagccatgtaaatgagattaacctcgaatttgctagagatgttgaagacacgcatctcataattattaaagatatggta |
23693404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 8423483 - 8423446
Alignment:
| Q |
355 |
cttataaatgattgatattacttgttttacactctaaa |
392 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
8423483 |
cttatatatgattgatattacttggtttacactctaaa |
8423446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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