View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_20 (Length: 462)
Name: NF14713_low_20
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Complemental strand, 5517158 - 5516711
Alignment:
| Q |
14 |
gaagctcattttcatattgctctcaagccttttactaggatgcctcttggtcagagttgtttcaggtaaaataatatatgtaaagtatttgtttatttag |
113 |
Q |
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| T |
5517158 |
gaagctcattttcatattgctctcaagccttttactaggatgcctcttggtcagagttgtttcaggtaaaataatatatgttaagtatttgtttatttag |
5517059 |
T |
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| Q |
114 |
tttccg----------------taaaaattgcataatctggctaattttcagggttgtttnnnnnnntcaaaccaaaccgctaaactaaattgaaccgca |
197 |
Q |
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| T |
5517058 |
tttccaaaatatatcaaactaataaaaattgcataatctggctaattttcagggttgtttaaaaaaatcaaaccaaaccgctaaaccaaattgaaccgca |
5516959 |
T |
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| Q |
198 |
ctgaaaaatatcaaactacgactaatagtttgtgagatgaactattcgaccagctcagtttgtgaacttggtgcggttcagtttttggtttttcttaatg |
297 |
Q |
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| T |
5516958 |
ctgaaaaatatcaaactacgactaacagtttgtgagctgaactattcgaccagctcagtttgtgaacttggtgcggttcagtttttggttttttttaatg |
5516859 |
T |
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| Q |
298 |
tcctaatattcaatttggtttagtgttgttaagnnnnnnnnncaacagtcttagttatcggttaataataacaaatttggtgcaattcggttaagaaaat |
397 |
Q |
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| T |
5516858 |
tcctaatattcaatttggtttagtgttgttaagtttttttttcaacagtcttagttatcggttaataataacaaatttggtgcaattcggttaagaaaat |
5516759 |
T |
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| Q |
398 |
cacttccgaacgaaaaaagtacatttcaattttttgtaaaggtagttt |
445 |
Q |
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| T |
5516758 |
cacttccgaacgaaaaaagtacatttcaattttttgtaaaggtagttt |
5516711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 5521863 - 5521815
Alignment:
| Q |
14 |
gaagctcattttcatattgctctcaagccttttactaggatgcctcttg |
62 |
Q |
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|||| |||| |||||||||||||||||||||||||||||| | |||||| |
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| T |
5521863 |
gaagttcatcttcatattgctctcaagccttttactaggaggtctcttg |
5521815 |
T |
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