View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_22 (Length: 447)
Name: NF14713_low_22
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 213 - 430
Target Start/End: Complemental strand, 49278687 - 49278470
Alignment:
| Q |
213 |
attacaaatgatttttgaaaaagacagcagaaaattgattatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaa |
312 |
Q |
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| T |
49278687 |
attacaaatgatttttgaaaaagacagcagaaaattgattatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaa |
49278588 |
T |
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| Q |
313 |
attagtttattatatctatatgaggaggggtcaagttacacacgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttct |
412 |
Q |
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| T |
49278587 |
atttgtttattatatctatatgaggaggggtcaagttacacacgatgcatatggcatgtatgtcactcatacactattttaggattttccatatttttct |
49278488 |
T |
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| Q |
413 |
ccacacctccctgatatc |
430 |
Q |
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| T |
49278487 |
ccccacctccctgatatc |
49278470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 49278929 - 49278718
Alignment:
| Q |
1 |
tctgcattcctaacattgtaaattgtgactttcagcaatatttattaaagcagatttgtttaaggttatcgaaagtaaattattgattgtacattgctta |
100 |
Q |
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| T |
49278929 |
tctgctttcctaacattgtaaattgtgattttaatcaatatttattaaagcagaactgtttaaggttaccgaaagtaaattattgattgtacattgatta |
49278830 |
T |
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| Q |
101 |
taactaatttttccgtgagtaacatgtttggatttgaaactaaaagaaaatgacttgtatgcaagtgaaattcttctggcgtgcagagaggcctttaatg |
200 |
Q |
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| T |
49278829 |
tcactaatttttctgtgagtaacatgtttggatttgaaactaaaagaaaatgacttgtatgcaattgaaattcttctggcgtgcagagaggcctttaatg |
49278730 |
T |
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| Q |
201 |
aggttacccttc |
212 |
Q |
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| T |
49278729 |
aggttacccttc |
49278718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 49275392 - 49275304
Alignment:
| Q |
57 |
tgtttaaggttatcgaaagtaaattattgattgtaca-ttgcttataactaatttttccgtgagtaacatgtttggatttgaaactaaaa |
145 |
Q |
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| T |
49275392 |
tgtttaagtttaccgaaagtaaattattgattgtacatttgcttataactactctttcagtgagttacatgttt-aatttgaaactaaaa |
49275304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 352
Target Start/End: Complemental strand, 49285402 - 49285302
Alignment:
| Q |
252 |
tatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaaattagtttattatatctatatgaggaggggtcaagttac |
351 |
Q |
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| T |
49285402 |
tatcggtgtctatttttggctcacctattcatttcttgtgttgggatttatgcttaataaaatttcctgattatatctgcatgaggagggatcaagttac |
49285303 |
T |
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| Q |
352 |
a |
352 |
Q |
| |
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| T |
49285302 |
a |
49285302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 423
Target Start/End: Complemental strand, 862084 - 862026
Alignment:
| Q |
364 |
tggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
423 |
Q |
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| T |
862084 |
tggcatgtatgtcactcatccactagtttatga-tttccatctttttctccccacctccc |
862026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 7938451 - 7938520
Alignment:
| Q |
354 |
acgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
423 |
Q |
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| T |
7938451 |
acgatacatgtggcatgtatgccactcatccactattttaggattttccatatttttctcccaacctccc |
7938520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 52329253 - 52329193
Alignment:
| Q |
353 |
cacgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttctc |
413 |
Q |
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| T |
52329253 |
cacgatacatgtggcatgtatgctactcatccactattttaggattttccatatttttctc |
52329193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 419
Target Start/End: Complemental strand, 31416027 - 31415992
Alignment:
| Q |
384 |
cactattttaggattttccatatttttctccacacc |
419 |
Q |
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| T |
31416027 |
cactattttaggattttccatatttttctccccacc |
31415992 |
T |
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