View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_low_26 (Length: 414)

Name: NF14713_low_26
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_low_26
NF14713_low_26
[»] chr3 (2 HSPs)
chr3 (1-398)||(20184844-20185244)
chr3 (28-186)||(46026465-46026613)
[»] chr4 (3 HSPs)
chr4 (1-398)||(50550680-50551070)
chr4 (13-323)||(51645425-51645737)
chr4 (13-323)||(36220077-36220390)
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-323)||(18699-19023)
[»] chr7 (1 HSPs)
chr7 (13-323)||(45597162-45597474)
[»] chr2 (1 HSPs)
chr2 (28-186)||(588068-588216)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 20185244 - 20184844
Alignment:
Q  1 aactcaacgatgtgttctttcacatcttcttctcttcttggttctctttcatcaacaaacaacacaaattatcaaaaaccacttttttcttcttcttctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20185244 aactcaacgatgtgttctttcacatcttcttctcttcttggttctctttcatcaacaaataacacaaattatcaaaaaccacttttttcttcttcttctt 20185145  T
Q  101 c---cactcaaatctcaatttctcacaacacaaaaagaaaacaaaatcaccaccagcaatactttattcagatctatgagaaccctttcaatccttacaa 197  Q
    |   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20185144 ctttcactcaaatctcaatttcccacaacacaaaaagaaaacaaaatcaccaccagcaatactttattcagatctatgagaaccctttcaatccttacaa 20185045  T
Q  198 cacaaaaggaaacaaaatcaacatcaacctttccatggttctgatggggttgttgttaaaattggaaagaagaagagaggccaaggcatcagctttcatg 297  Q
    || ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20185044 cataaaaggaaataaaatcaacatcaaccattccttggttctgatggggttgttgttaaaattggaaagaagaagagaggccaaggcatcagctttcatg 20184945  T
Q  298 tggaaacgaaaattccatgagaaaaagatagtaaaacgacggcagatgatgatgagaaagcgatgagaaaacgacgacagcaaaaccgcaaacccagttt 397  Q
    |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20184944 tggaaacgaaaattccatgagaaaaagatagtaaaatgacgacaaatgatgatgagaaagcgatgagaaaacgacgacggcaaaaccgcaaacccagttt 20184845  T
Q  398 g 398  Q
    |    
T  20184844 g 20184844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 46026465 - 46026613
Alignment:
Q  28 tcttctcttcttggttctctttcatcaacaaacaacacaaattatcaaaaaccacttttttcttcttcttcttccactcaaatctcaatttctcacaaca 127  Q
    |||||||||| | |||||||||||| || || || ||||||| ||||||||| ||| | ||||    |||||  | ||||||||||||||| ||||||||    
T  46026465 tcttctcttcatcgttctctttcatgaaaaatcatcacaaatcatcaaaaactactatcttct----cttct--cgctcaaatctcaatttttcacaaca 46026558  T
Q  128 caaaaagaaaacaaaatcaccaccagcaatactttattcagatctatgagaaccctttc 186  Q
    | ||||    | ||| ||||||||||||| |||| |||||||||| |||||||||||||    
T  46026559 ctaaaa----agaaagtcaccaccagcaacacttcattcagatctgtgagaaccctttc 46026613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 50550680 - 50551070
Alignment:
Q  1 aactcaacgatgtgttctttcacatcttcttctcttcttggttctctttcatcaacaaacaacacaaattatcaaaaaccacttttttcttcttcttctt 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50550680 aactcaacgatgtgttctttcacatcttcttctcttatgggttctctttcatcaacaaacaacacaaattatcaaaaaccactttcttcttcttcttctt 50550779  T
Q  101 ccactcaaatctcaatttctcacaacacaaaaagaaaacaaaatcaccaccagcaatactttattcagatctatgagaaccctttcaatccttacaacac 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50550780 tcactcaaatctcaatttctcacaacacaaaaagaaaacaaaatcaccaccagcaatactttattcagatctatgagaaccctttcaatctttacaacac 50550879  T
Q  201 aaaaggaaacaaaatcaacatcaa---cctttccatggttctgatggggttgttgttaaaattggaaagaagaagagaggc--caaggcatcagctttca 295  Q
    ||||||||||||||||||||||||   ||||||||||||||            |||||||||||||||||||||| |||||  |||||||||||||||||    
T  50550880 aaaaggaaacaaaatcaacatcaacctcctttccatggttc------------tgttaaaattggaaagaagaagggaggccacaaggcatcagctttca 50550967  T
Q  296 tgtggaaacgaaaattccatgagaaaaagatagtaaaacgacggcagatgatgatgagaaagcgatgagaaaacgacgacagcaaaaccgcaaacccagt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  50550968 tgtggaaacgaaaattccatgagaaaaagatagtaaaacgacgacagatgatgatgagaaagcgatgagaaaacgacgacggcaaaaccgaaaacccagt 50551067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 51645737 - 51645425
Alignment:
Q  13 tgttctttcacatcttcttctcttcttggttctctttcatcaacaaacaacacaaattatcaaaaaccacttttttcttcttcttcttccactcaaatct 112  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||||||||||| |||||||||||    
T  51645737 tgttcttccacagcttcttctcttcttggttctctttcatcaacaaacaacacaaattatcaaaaatcacttt---cttcttcttctttcactcaaatct 51645641  T
Q  113 caatttctcacaacacaaaaagaaaacaaaatcaccaccagcaatactttattcagatctatgagaaccctttcaatccttacaacacaaaaggaaacaa 212  Q
     ||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51645640 aaatttctcacagcacaaaa-gaaaacaaaatcaccactagcaacactttattcagatctatgagaaccctttcaatccttacaacacaaaaggaaacaa 51645542  T
Q  213 aatcaacatcaacctttccatggttctgatggggttgttgttaaa------attggaaagaagaagagaggccaaggcatcagctttcatgtggaaacga 306  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||      ||||||||||| ||||||| ||||| ||   ||||||   |||||||||    
T  51645541 aatcaacgtcaacctttccttggttctgatggggttgttgttaaaattgaaattggaaagaataagagagaccaagacactggctttccaatggaaacga 51645442  T
Q  307 aaattccatgagaaaaa 323  Q
    ||| |||||||||||||    
T  51645441 aaaatccatgagaaaaa 51645425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 36220390 - 36220077
Alignment:
Q  13 tgttctttcacatcttcttctcttcttggttctctttcatcaacaaacaacacaaattatcaaaaaccacttttttcttcttcttcttccactcaaatct 112  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||    
T  36220390 tgttcttccacagcttcttctcttcttggttttctttcatcaacaaacaacacaaattatcaaaaaccacttt---cttcttcttctttcactcaaatct 36220294  T
Q  113 caatttctcacaacacaaaaagaaaacaaaatcaccaccagcaatacttt-attcagatctatgagaaccctttcaatccttacaacacaaaaggaaaca 211  Q
    |||||||||||||||||||| |||||||||| |||||||||||  ||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||    
T  36220293 caatttctcacaacacaaaa-gaaaacaaaaacaccaccagcaccacttttattcagatctataagaaccctttcaatccgtacaatacaaaaggaaaca 36220195  T
Q  212 aaatcaacatcaacctttccatggttctgatggggttgttgttaaaatt------ggaaagaagaagagaggccaaggcatcagctttcatgtggaaacg 305  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||      |||||||| ||||||||||||| ||   ||||||   ||||||||    
T  36220194 aaatcaacatcaacctttccttggttctgatggggttgttgttaaaattggaattggaaagaataagagaggccaagacactggctttccaatggaaacg 36220095  T
Q  306 aaaattccatgagaaaaa 323  Q
    |||| | |||||||||||    
T  36220094 aaaaattcatgagaaaaa 36220077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 19023 - 18699
Alignment:
Q  1 aactcaacgatgtgttctttcacatcttcttctcttcttggttctctttcatcaacaaacaacacaaattatcaaaaaccacttttttcttcttcttctt 100  Q
    |||||||| || ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       
T  19023 aactcaactatatgttcttccatagcttcttctcttcttggttctctttcatcaacaaacaacacaaattattaaaaaccacttttttcttcttcttt-- 18926  T
Q  101 ccactcaaatctcaatttctcacaacacaaaaagaaaacaaaatcaccaccagcaatactttattcagatctatgagaaccctttcaatccttacaacac 200  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18925 -cactcaaatctcaatttctcacaacacaaaa-gaaaacaaaatcaccaccagcaacactttattcagatctatgagaaccctttcaatccttacaacac 18828  T
Q  201 aaaaggaaacaaaatcaacatcaacctttccatggttctgatggggttgttgttaaaatt------ggaaagaagaagagaggccaaggcatcagctttc 294  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||      |||||||| ||||||||||||| |||  ||||||    
T  18827 aaaaggaaacaaaatcaacatcaacctttccttggttctgatggggtttttgttaaaattggaattggaaagaataagagaggccaagacattggctttc 18728  T
Q  295 atgtggaaacgaaaattccatgagaaaaa 323  Q
       |||||||||||| |||||||||||||    
T  18727 caatggaaacgaaaaatccatgagaaaaa 18699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 45597162 - 45597474
Alignment:
Q  13 tgttctttcacatcttcttctcttcttggttctctttcatcaacaaacaacacaaattatcaaaaaccacttttttcttcttcttcttccactcaaatct 112  Q
    ||||||| || | |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||| |||||||||||    
T  45597162 tgttcttccagagcttcttgtcttcttggttctctttcatcaacaaacaacagaaattatcaaaaaccacttt---cttcttcttctttcactcaaatct 45597258  T
Q  113 caatttctcacaacacaaaaagaaaacaaaatcaccaccagcaatactttattcagatctatgagaaccctttcaatccttacaacacaaaaggaaacaa 212  Q
    |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  45597259 caatttctcacagcacaaaa-gaaaacaaaatcaccaccagcaacactttattcagatttacgaggaccctttcaatccttacaacacaaaaggaaacaa 45597357  T
Q  213 aatcaacatcaacctttccatggttctgatggggttgttgttaa------aattggaaagaagaagagaggccaaggcatcagctttcatgtggaaacga 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||      |||||||||||| ||||||||||||| ||   ||||||   |||||||||    
T  45597358 aatcaacatcaacctttccttggttctgatggggttgttgttaaaattggaattggaaagaataagagaggccaagacactggctttccaatggaaacga 45597457  T
Q  307 aaattccatgagaaaaa 323  Q
    ||| |||||||||||||    
T  45597458 aaaatccatgagaaaaa 45597474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 588216 - 588068
Alignment:
Q  28 tcttctcttcttggttctctttcatcaacaaacaacacaaattatcaaaaaccacttttttcttcttcttcttccactcaaatctcaatttctcacaaca 127  Q
    |||||||||| | |||||||||||| || || || ||||||| ||||||||| ||| | ||||    |||||  ||||||||||||||||| ||||||||    
T  588216 tcttctcttcatcgttctctttcatgaaaaatcatcacaaatcatcaaaaactactatcttct----cttct--cactcaaatctcaatttttcacaaca 588123  T
Q  128 caaaaagaaaacaaaatcaccaccagcaatactttattcagatctatgagaaccctttc 186  Q
    |||    |||| ||| ||||||||||||| |||  |||||||| |  ||||||||||||    
T  588122 caa----aaaagaaagtcaccaccagcaacactccattcagatttgcgagaaccctttc 588068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University