View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14713_low_27 (Length: 412)
Name: NF14713_low_27
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_27 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 42444805 - 42444394
Alignment:
| Q |
1 |
aataattccctttccaaaatttgattccttccaaaatccgatattttgctgcaaccccaagaaatctggggtatgtgtggtttgacgacgtagtgtcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42444805 |
aataattccctttccaaaatttgattccttccaagatccgatattttgctgcaaccccaagaaatctggggtatgtgtggtttgacgacgtagtgtcctt |
42444706 |
T |
|
| Q |
101 |
tcgggatgagctgaaacaaaaccattcttctgttcaacagctctcaactcttcttgagttagtcttgcggcaaaaccactcaacacatttctgtatgaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42444705 |
tcgggatgagctgaaacaaaaccattcttctgttgaacagctctcaactcttcttgagttagtcttgcggcaaaaccactcaacacatttcggtatgaat |
42444606 |
T |
|
| Q |
201 |
aaatcattcgcggttgttcatcagagctcataaccgtagttggcatgaatgaatgatgccagctttctaaatcttcttctgattgagtgaatagcttacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42444605 |
aaatcattcgcggttgttcatcagagctcataaccgtagttggcatgaatgaatgatgccagctttctaaatcttcttctgattgagtgaatagcttacc |
42444506 |
T |
|
| Q |
301 |
ctctggcttattcacatggataatgtatatttttgaagtgcttgtctcagtactccgagcggtagggtgcagttcacttccttgagtaaaatgaatatgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42444505 |
ctctggcttattcacatggataatgtatatttttgaagtgcttgtctcagtactccgagcggtagggtgcagttcacttccttgagtaaaatgaatatgg |
42444406 |
T |
|
| Q |
401 |
aaactcaacacg |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42444405 |
aaactcaacacg |
42444394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University