View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_low_28 (Length: 408)

Name: NF14713_low_28
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_low_28
NF14713_low_28
[»] chr8 (1 HSPs)
chr8 (1-390)||(29272019-29272408)
[»] chr6 (47 HSPs)
chr6 (1-388)||(27696772-27697159)
chr6 (1-381)||(27609310-27609690)
chr6 (1-385)||(27716685-27717069)
chr6 (1-385)||(27680574-27680958)
chr6 (1-372)||(31286168-31286536)
chr6 (1-388)||(27675790-27676184)
chr6 (1-385)||(27591196-27591585)
chr6 (1-385)||(26804070-26804463)
chr6 (1-165)||(27704669-27704833)
chr6 (234-373)||(26648278-26648417)
chr6 (234-373)||(26754246-26754385)
chr6 (1-171)||(28787865-28788035)
chr6 (1-171)||(28793986-28794156)
chr6 (1-185)||(27603080-27603265)
chr6 (240-384)||(28788089-28788233)
chr6 (240-384)||(28794210-28794354)
chr6 (1-136)||(26624874-26625009)
chr6 (1-128)||(26648082-26648209)
chr6 (1-136)||(26730851-26730986)
chr6 (1-128)||(26754050-26754177)
chr6 (198-385)||(26625031-26625220)
chr6 (198-385)||(26731008-26731197)
chr6 (61-345)||(27425835-27426125)
chr6 (239-385)||(27704430-27704576)
chr6 (234-346)||(25491525-25491637)
chr6 (234-373)||(26863439-26863578)
chr6 (234-388)||(26813339-26813493)
chr6 (234-372)||(26885915-26886053)
chr6 (234-373)||(26960920-26961056)
chr6 (237-373)||(26657820-26657956)
chr6 (237-373)||(26763791-26763927)
chr6 (11-87)||(26813171-26813247)
chr6 (1-138)||(26863183-26863320)
chr6 (234-385)||(27663387-27663535)
chr6 (311-373)||(27216377-27216439)
chr6 (40-134)||(27529741-27529838)
chr6 (238-380)||(27602896-27603038)
chr6 (234-271)||(26951591-26951628)
chr6 (234-271)||(26979230-26979267)
chr6 (241-373)||(26825668-26825800)
chr6 (234-277)||(26637410-26637453)
chr6 (234-277)||(26743376-26743419)
chr6 (299-373)||(26850568-26850642)
chr6 (8-93)||(25491785-25491870)
chr6 (1-58)||(26885694-26885751)
chr6 (234-276)||(27216300-27216342)
chr6 (299-352)||(26979299-26979352)
[»] chr1 (3 HSPs)
chr1 (1-373)||(266553-266919)
chr1 (234-346)||(28131725-28131837)
chr1 (234-271)||(28125981-28126018)
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-152)||(1957-2109)
[»] scaffold1870 (2 HSPs)
scaffold1870 (1-171)||(393-563)
scaffold1870 (240-385)||(616-761)
[»] scaffold0419 (2 HSPs)
scaffold0419 (1-170)||(9111-9280)
scaffold0419 (240-385)||(9335-9480)
[»] scaffold0277 (4 HSPs)
scaffold0277 (2-171)||(3103-3272)
scaffold0277 (2-171)||(12066-12235)
scaffold0277 (240-385)||(11869-12014)
scaffold0277 (240-385)||(2906-3051)
[»] chr2 (1 HSPs)
chr2 (242-385)||(17991397-17991540)
[»] scaffold0003 (1 HSPs)
scaffold0003 (61-345)||(61238-61528)
[»] chr4 (8 HSPs)
chr4 (238-345)||(18075613-18075720)
chr4 (236-351)||(18722357-18722472)
chr4 (61-136)||(18075430-18075506)
chr4 (236-351)||(18653761-18653876)
chr4 (236-351)||(18697685-18697800)
chr4 (236-385)||(18677809-18677958)
chr4 (236-351)||(18687897-18688012)
chr4 (236-351)||(18729779-18729894)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 29272408 - 29272019
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29272408 taaagagcctggagaaagaagtaggttatgctgccaggatgatctagttcgtgttttaagagaaaacactgtgagtaagattgatatctatgatcatttt 29272309  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29272308 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttattttcactcaattgcatgttaatatttgtacatc 29272209  T
Q  201 ttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgat 300  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  29272208 ttatttttattgtggttgattcatatttttttctttgttaaaagggaactagtaaaattgaaatgatatatacgaatctccattccatagaatctgtgat 29272109  T
Q  301 agacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcattt 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29272108 agacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcattt 29272019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 47)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 27697159 - 27696772
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27697159 taaagagcctggagaaagaagtaggttatgctgtcaggatgatataactcgggttttaagagaaaacactgtgagtaagattgatatctatgatcatttt 27697060  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatc 200  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||    
T  27697059 gttatttagttttaatacgactttgctctatttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaatatttctatatc 27696960  T
Q  201 ttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgat 300  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27696959 ttatttttattgtggttgattcatgtttttatctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgat 27696860  T
Q  301 agacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcat 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  27696859 agacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcattgaaaatggccatttttctgaaggtctcaagcat 27696772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 27609690 - 27609310
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27609690 taaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatctatgatcatttt 27609591  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatc 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||  ||    
T  27609590 gttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaatatatctatgtc 27609491  T
Q  201 ttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgat 300  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27609490 ttatttttattgtggttgattcatgtttttatctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgat 27609391  T
Q  301 agacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtct 381  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||    
T  27609390 agacaagaaaggaaaggccttcaagaagatgacaaaactgaaaacacttatcattgaaaatggccatttttctggaggtct 27609310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 27717069 - 27716685
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27717069 taaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatctatgatcatttt 27716970  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatc 200  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| ||||||| | || ||||||||||||||||||||| ||||||||||||| || |||    
T  27716969 gttatttagttttaatacaactttgctctttttgaactaaatatgatcatctaaaacgagcatttcttttcactcaattacatgttaatatttctatatc 27716870  T
Q  201 ttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgat 300  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27716869 ttatttttattgtggttgattcatgtttttatctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgat 27716770  T
Q  301 agacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||| ||||  ||||||||||    
T  27716769 agacaagaaaggaaaggccttcaagaagatgacaaaactgaaaacacttatcattgaaaatggccattgttctaaaggtctcaag 27716685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 27680574 - 27680958
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    |||||||||||||||| |||||||||||||  | || || |||||| ||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  27680574 taaagagcctggagaacgaagtaggttatggcgtcaagaagatataattcatgttttaaaagaaaacactgtgagtatgattgatatctatgatcatttt 27680673  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatc 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||  ||    
T  27680674 gttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaatatatctatgtc 27680773  T
Q  201 ttatttttattgtggttgattcatgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgat 300  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27680774 ttatttttattgtggttgattcatgtttttatctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgat 27680873  T
Q  301 agacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||    
T  27680874 agacaagaaaggaaaggccttcaagaagatgacaaaactgaaaacacttatcattgaaaatggccttttttctggaggtctcaag 27680958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 31286168 - 31286536
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||| ||||||||||||||| |||| || || ||||||||||||| || |||||  |||||||||||||||||||||||||| |||| ||| |||    
T  31286168 taaagagccaggagaaagaagtaggctatggtgtcaagatgatatagttcatgctttaaatgaaaacactgtgagtaagattgatatctatgttcaattt 31286267  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatc 200  Q
    ||||||||||||||| |||||||||||||||||         || | ||||| ||||||| |||| |||| ||| |||| ||||| ||| | |  | |||    
T  31286268 gttatttagttttaaaacgactttgctcttttt---------atgaccatctcatactagtatttatttttacttaattacatgtaaatttctccatatc 31286358  T
Q  201 ttatttttattgtggttgattcatgnnnnnnncttt------gttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatc 294  Q
    ||||||||||||||||||||| |||        |||      ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  31286359 ttatttttattgtggttgatttatgttcttttttttttttttgttaaaagggaactagtaaaattgaaatgatatatatgaatttccactccatggaatc 31286458  T
Q  295 cgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttc 372  Q
    ||| |||||| ||||||||| |||||||||||||||||||||||| |||||| | ||| | |||||||||||||||||    
T  31286459 cgtaatagaccagaaaggaatggccttcaagaagatgacaaaacttaaaacactaatcattgaaaatggccatttttc 31286536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 27676184 - 27675790
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||||||||||||||| |||||||| |  || ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| |||    
T  27676184 taaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaacagaaaacactgtgagtaagattgatatctatgttcaattt 27676085  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttctttt--cactcaattgcatgttaatatttgtaca 198  Q
    |||||||||||||||||| | ||||||| ||||||||||||||| | ||||| ||| ||| |||| ||||  |||| |||| ||||| ||| | | |  |    
T  27676084 gttatttagttttaatacaattttgctcattttggactaaatatgaccatctcatattagtatttttttttccacttaattacatgtaaatttctctgta 27675985  T
Q  199 tcttatttttattgtggttgattca-----tgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaat 293  Q
        |||||||||||||||||| ||     |         ||||||||||||||||| |||||| ||||||||||| ||||||| | || ||||||||||    
T  27675984 aaagatttttattgtggttgatgcattttttatttttatttttgttaaaagggaactggtaaaactgaaatgatatgtatgaatttgcactccatggaat 27675885  T
Q  294 ccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcat 388  Q
    |||| |||||||||||||||||||||||||| |||||||||| | | |||||| ||||| | ||||||||||||| ||||  |||||||||||||    
T  27675884 ccgtaatagacaagaaaggaaaggccttcaaaaagatgacaagattgaaaacacttatcattgaaaatggccattgttctaaaggtctcaagcat 27675790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 27591585 - 27591196
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||||||||||||||| |||||||| |  || ||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||| ||| |||    
T  27591585 taaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaaaagaaaacactgtgcgtaagattgatatctatgttcaattt 27591486  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatc 200  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| | ||||| ||||||| || | ||| |||| |||| ||||| ||| | | |  | |    
T  27591485 gttatttagttttaatacaactttgctcattttggactaaatatgaccatctcatactagtatatttttccacttaattacatgtaaatttctctgtaac 27591386  T
Q  201 ttatttttattgtggttgattca-----tgnnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatcc 295  Q
      |||||||||||||||||| ||     |         |||||||| |||||||| |||||| ||||||||||| ||||||| | || || ||||||||     
T  27591385 agatttttattgtggttgatgcattttttatttttatttttgttaacagggaactggtaaaactgaaatgatatgtatgaatttgcactctatggaatct 27591286  T
Q  296 gtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    || |||||||||||||||||||||||||| |||||||||| | | |||||| ||||  | ||||||||||||| ||||  ||||||||||    
T  27591285 gtaatagacaagaaaggaaaggccttcaaaaagatgacaagattgaaaacacttattattgaaaatggccattgttctaaaggtctcaag 27591196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 26804070 - 26804463
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    |||||| |||| | || |||||||||||||  | || || |||||||||| |||| ||| |||||||| |||||||||||||||||| |||| ||| |||    
T  26804070 taaagatcctgaaaaacgaagtaggttatggcgtcatgaagatatagttcatgttataaaagaaaacattgtgagtaagattgatatttatgttcaattt 26804169  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttctttt-cactcaattgcatgttaatatttgtacat 199  Q
    ||||||||||||  ||||||||||||  |||| |||||| |||| | ||||| ||||||| |||| |||| |||| |||| ||| | ||| | | || ||    
T  26804170 gttatttagtttagatacgactttgcatttttaggactacatatgaccatctcatactagtatttttttttcacttaattacatataaatttctctatat 26804269  T
Q  200 cttatttttattgtggttgattcatgnnnnnnncttt---------gttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatgg 290  Q
    |||||| |||||||| |||||| |||        |||         |||||||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  26804270 cttattgttattgtgattgatt-atgttatttttttttttttttgtgttaaaagggaactagtaaaattgaaatgataaatatgaatttccactccatgg 26804368  T
Q  291 aatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||||||| | |||| ||||| | |||||||| |||||||||| ||||||||||    
T  26804369 aatccgtaatagaccagaaaggaaaggccttcaaaaagatgacaaaactgagaacacttatcattgaaaatggacatttttctgaaggtctcaag 26804463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 27704833 - 27704669
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||| ||||||||||||||||||||||||||| ||||||||||||    
T  27704833 taaagagcctggagaaagaagtaggttatgctgccatgatgatatagttaatgtcttaaaagaaaacactgtgagtaagattgatatctatgatcatttt 27704734  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt 165  Q
    ||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| ||||    
T  27704733 gttatttagttttaatatgactttgctctttttggactaaatatgaccatctcatactagtattt 27704669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 26648278 - 26648417
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgac 333  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  26648278 tttgttgaaagggaactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaagaagatgac 26648377  T
Q  334 aaaactcaaaacagttatcttcgaaaatggccatttttct 373  Q
    ||||||||||||| ||||| | |||||||| |||||||||    
T  26648378 aaaactcaaaacacttatcattgaaaatggtcatttttct 26648417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 26754246 - 26754385
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgac 333  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  26754246 tttgttgaaagggaactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaagaagatgac 26754345  T
Q  334 aaaactcaaaacagttatcttcgaaaatggccatttttct 373  Q
    ||||||||||||| ||||| | |||||||| |||||||||    
T  26754346 aaaactcaaaacacttatcattgaaaatggtcatttttct 26754385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 28787865 - 28788035
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    |||||||||||||||||||||||||||||| || || ||||||||||||  |||||||| ||||||||| ||||||| ||||||||| |||| ||| |||    
T  28787865 taaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaattt 28787964  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 171  Q
    |||||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  28787965 gttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtatttgttttc 28788035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 28793986 - 28794156
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    |||||||||||||||||||||||||||||| || || ||||||||||||  |||||||| ||||||||| ||||||| ||||||||| |||| ||| |||    
T  28793986 taaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaattt 28794085  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 171  Q
    |||||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  28794086 gttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtatttgttttc 28794156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27603265 - 27603080
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    |||||||||||||||||||||||||||||| || || || |||||||||| |||| ||| ||||||||||||||||||||||||||||||  |||| |||    
T  27603265 taaagagcctggagaaagaagtaggttatggtgtcaagacgatatagttcatgttctaacagaaaacactgtgagtaagattgatatataatatcaattt 27603166  T
Q  101 gttatttagttttaatacgac-tttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgt 185  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||| ||||||| ||||||  |||| ||| |||| |||| |||||    
T  27603165 gttatttagttttaatatgacttttggtctttttggactaaatatgatcatctcatactattatttttttccacttaattacatgt 27603080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 384
Target Start/End: Original strand, 28788089 - 28788233
Alignment:
Q  240 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 339  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||| ||||||||||||||||||||||||||||||||||||| | |    
T  28788089 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctccgaggaatccgtaatagacaagaaaggaaaggccttcaagaagatgacaagatt 28788188  T
Q  340 caaaacagttatcttcgaaaatggccatttttctggaggtctcaa 384  Q
     |||||  ||||| | ||||||||||||||||||  |||||||||    
T  28788189 gaaaacgcttatcattgaaaatggccatttttctaaaggtctcaa 28788233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 384
Target Start/End: Original strand, 28794210 - 28794354
Alignment:
Q  240 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 339  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||| ||||||||||||||||||||||||||||||||||||| | |    
T  28794210 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctccgaggaatccgtaatagacaagaaaggaaaggccttcaagaagatgacaagatt 28794309  T
Q  340 caaaacagttatcttcgaaaatggccatttttctggaggtctcaa 384  Q
     |||||  ||||| | ||||||||||||||||||  |||||||||    
T  28794310 gaaaacgcttatcattgaaaatggccatttttctaaaggtctcaa 28794354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26624874 - 26625009
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    |||||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||||||| |||||||||||||||||| |||||||| |||    
T  26624874 taaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatctatgatcaattt 26624973  T
Q  101 gttatttagttttaatacgactttgctctttttgga 136  Q
     ||||||||||||||||| |||||||||||||||||    
T  26624974 attatttagttttaatactactttgctctttttgga 26625009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26648082 - 26648209
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||||||||||  |||||||||||| || || ||||| ||||||| |||||||| |||||||||||||||||||||| |||| |||||||| |||    
T  26648082 taaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatctatgatcaattt 26648181  T
Q  101 gttatttagttttaatacgactttgctc 128  Q
    ||||||||||||||||||||||||||||    
T  26648182 gttatttagttttaatacgactttgctc 26648209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26730851 - 26730986
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    |||||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||||||| |||||||||||||||||| |||||||| |||    
T  26730851 taaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatctatgatcaattt 26730950  T
Q  101 gttatttagttttaatacgactttgctctttttgga 136  Q
     ||||||||||||||||| |||||||||||||||||    
T  26730951 attatttagttttaatactactttgctctttttgga 26730986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26754050 - 26754177
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||||||||||  |||||||||||| || || ||||| ||||||| |||||||| |||||||||||||||||||||| |||| |||||||| |||    
T  26754050 taaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatctatgatcaattt 26754149  T
Q  101 gttatttagttttaatacgactttgctc 128  Q
    ||||||||||||||||||||||||||||    
T  26754150 gttatttagttttaatacgactttgctc 26754177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 198 - 385
Target Start/End: Original strand, 26625031 - 26625220
Alignment:
Q  198 atcttatttttattgtggttgattcatgnnnnnnncttt-gttaaaa-gggaactagtaaaattgaaatgatatatatgaatctccattccatggaatcc 295  Q
    ||||||||||||||||||||||||||||        ||| ||||||| |||||||||||||||||||||||||||||||||| | |  || |||||||||    
T  26625031 atcttatttttattgtggttgattcatgtttttcttttttgttaaaaagggaactagtaaaattgaaatgatatatatgaattttccctctatggaatcc 26625130  T
Q  296 gtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    || |||||| |||||||||||||||||| |||||||||||||||||||||| ||||| | ||| |||| |  ||||||  ||||||||||    
T  26625131 gtaatagaccagaaaggaaaggccttcaggaagatgacaaaactcaaaacacttatcattgaagatggtcggttttctaaaggtctcaag 26625220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 198 - 385
Target Start/End: Original strand, 26731008 - 26731197
Alignment:
Q  198 atcttatttttattgtggttgattcatgnnnnnnncttt-gttaaaa-gggaactagtaaaattgaaatgatatatatgaatctccattccatggaatcc 295  Q
    ||||||||||||||||||||||||||||        ||| ||||||| |||||||||||||||||||||||||||||||||| | |  || |||||||||    
T  26731008 atcttatttttattgtggttgattcatgtttttcttttttgttaaaaagggaactagtaaaattgaaatgatatatatgaattttccctctatggaatcc 26731107  T
Q  296 gtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    || |||||| |||||||||||||||||| |||||||||||||||||||||| ||||| | ||| |||| |  ||||||  ||||||||||    
T  26731108 gtaatagaccagaaaggaaaggccttcaggaagatgacaaaactcaaaacacttatcattgaagatggtcggttttctaaaggtctcaag 26731197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 61 - 345
Target Start/End: Complemental strand, 27426125 - 27425835
Alignment:
Q  61 agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttggac-taaatattatcatctgatact 158  Q
    |||||||||||||||||||||||||||  | || || |||||||||||| |||||| | ||||||||||||||||||  |  |||  | |||||||||||    
T  27426125 agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttggatatgtatacaagcatctgatact 27426026  T
Q  159 agcatttcttttcactcaattgcatgttaatatttgtacatcttatttttattgtggttgattcatgnnnnnnncttt------gttaaaagggaactag 252  Q
    |  | ||||||||| | |||| ||  | ||| | | ||  |||||||| |||||||||||||||||         |||      ||||||||||||| ||    
T  27426025 actaattcttttcagttaattacacataaatttctcta--tcttatttgtattgtggttgattcatcttttttttttttttttcgttaaaagggaaccag 27425928  T
Q  253 taaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaac 345  Q
    ||||||||||||||||||||||||| | || || ||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||    
T  27425927 taaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaagatgacacacctcaaaac 27425835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 239 - 385
Target Start/End: Complemental strand, 27704576 - 27704430
Alignment:
Q  239 taaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaac 338  Q
    ||||||||||||||||||||| ||||||| ||||||||| | || |||||||||||| | |||||| | ||||||| |||||||||||||||||||| |     
T  27704576 taaaagggaactagtaaaattcaaatgatgtatatgaattttcactccatggaatccataatagaccaaaaaggaatggccttcaagaagatgacaagat 27704477  T
Q  339 tcaaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    | |||||| ||||| | ||||||||||||| ||||  ||||||||||    
T  27704476 tgaaaacacttatcattgaaaatggccattgttctaaaggtctcaag 27704430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 25491637 - 25491525
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgac 333  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||  ||||||  ||| ||| ||||||||||||||| |||    
T  25491637 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatttcccctccatggaattcgaaatagactggaatggagaggccttcaagaagacgac 25491538  T
Q  334 aaaactcaaaaca 346  Q
    |||||||||||||    
T  25491537 aaaactcaaaaca 25491525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 26863439 - 26863578
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgac 333  Q
    ||||| |||||||||||||||||||||||||| ||||| || ||   | ||| | |||| |||| ||||||  ||| ||||||||||||||||||||||     
T  26863439 tttgtgaaaagggaactagtaaaattgaaatggtatatctgcattgtccttcaacggaacccgtaatagactggaatggaaaggccttcaagaagatgaa 26863538  T
Q  334 aaaactcaaaacagttatcttcgaaaatggccatttttct 373  Q
    ||||||||||||| || || | ||||||||||||||||||    
T  26863539 aaaactcaaaacacttgtcattgaaaatggccatttttct 26863578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 234 - 388
Target Start/End: Original strand, 26813339 - 26813493
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgac 333  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||   | | | | |||| ||||||   ||| |||||||||||||||||||||||    
T  26813339 tttgttaaaagggaactagtaaaattgaaatgatatatctaaatttccccacaaagaattccgagatagattggaatggaaaggccttcaagaagatgac 26813438  T
Q  334 aaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcat 388  Q
    ||||||||||||| ||||  | |||||||| || ||||||  ||||| |||||||    
T  26813439 aaaactcaaaacacttattattgaaaatggtcaattttctaaaggtcccaagcat 26813493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 372
Target Start/End: Original strand, 26885915 - 26886053
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaa-tctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatga 332  Q
    ||||||||||||||||||| || ||||||||||||||| |||| | |||   | |||||| |||| ||||||   || |||||| |||||||||||||||    
T  26885915 tttgttaaaagggaactagcaacattgaaatgatatatctgaactgtcccg-caatggaacccgtaatagactgtaatggaaagtccttcaagaagatga 26886013  T
Q  333 caaaactcaaaacagttatcttcgaaaatggccatttttc 372  Q
    |||||||||||||  ||||| | |||||||||||||||||    
T  26886014 caaaactcaaaactcttatcattgaaaatggccatttttc 26886053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 26960920 - 26961056
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaa-tctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatga 332  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||  || ||| || |||   |||||| ||| | |||||| |||||||||||||    
T  26960920 tttgttaaaagggaactagtaaaattgaaatgatatatttgaattctcc-ctcaatgaaacccg---tagacatgaatgaaaaggcattcaagaagatga 26961015  T
Q  333 caaaactcaaaacagttatcttcgaaaatggccatttttct 373  Q
    |||| ||||||||| ||||| | || || ||| ||||||||    
T  26961016 caaatctcaaaacacttatcattgagaaaggcaatttttct 26961056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 26657820 - 26657956
Alignment:
Q  237 gttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaa 336  Q
    ||||||||||||| ||||| ||||||||||||||| |||||   |  || |||||| || | ||||||  ||| |||||| |||||| ||||||||||||    
T  26657820 gttaaaagggaaccagtaacattgaaatgatatatctgaattgtccctcgatggaaaccataatagactggaatggaaagcccttcaggaagatgacaaa 26657919  T
Q  337 actcaaaacagttatcttcgaaaatggccatttttct 373  Q
     ||||||||  ||||| | |||||||||| |||||||    
T  26657920 tctcaaaactcttatcattgaaaatggccgtttttct 26657956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 26763791 - 26763927
Alignment:
Q  237 gttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaa 336  Q
    ||||||||||||| ||||| ||||||||||||||| |||||   |  || |||||| || | ||||||  ||| |||||| |||||| ||||||||||||    
T  26763791 gttaaaagggaaccagtaacattgaaatgatatatctgaattgtccctcgatggaaaccataatagactggaatggaaagcccttcaggaagatgacaaa 26763890  T
Q  337 actcaaaacagttatcttcgaaaatggccatttttct 373  Q
     ||||||||  ||||| | |||||||||| |||||||    
T  26763891 tctcaaaactcttatcattgaaaatggccgtttttct 26763927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 26813171 - 26813247
Alignment:
Q  11 ggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatat 87  Q
    |||||| |||||||| |||| || || ||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  26813171 ggagaacgaagtaggctatggtgtcaagatgatatagttcatgttttaaaagaaaacattgtgagtaagattgatat 26813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 26863183 - 26863320
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||| || ||| ||||||||||||| || || ||||||||| | |  ||||||  ||||||||||||||||||||||||||| ||||| || | |    
T  26863183 taaagagccgggtgaacgaagtaggttatggtgtcatgatgatataatccacgttttagaagaaaacactgtgagtaagattgatatttatgaacaatct 26863282  T
Q  101 gttatttagt-tttaatacgactttgctctttttggact 138  Q
    |||| ||||| ||||| || ||||||||| |||| ||||    
T  26863283 gtta-ttagtctttaacacaactttgctcgttttagact 26863320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 27663535 - 27663387
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgac 333  Q
    |||||||||||||||||||||||||||||||||||||| |||||      || |||||| ||   ||  |||  || | ||||||||| ||||||||||     
T  27663535 tttgttaaaagggaactagtaaaattgaaatgatatatctgaattgttcctcaatggaaccc---atcaacatcaatgaaaaggcctttaagaagatgaa 27663439  T
Q  334 aaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    ||||||||||||| ||||| | ||||| ||| ||||||||  ||||||||||    
T  27663438 aaaactcaaaacacttatcattgaaaagggctatttttctaaaggtctcaag 27663387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 27216377 - 27216439
Alignment:
Q  311 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttct 373  Q
    ||||||||||||| |||||||| ||| ||||||||| ||||| | ||||||||||||||||||    
T  27216377 ggaaaggccttcacgaagatgaaaaatctcaaaacatttatcattgaaaatggccatttttct 27216439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 27529838 - 27529741
Alignment:
Q  40 tgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgtt--atttag-ttttaatacgactttgctctttttg 134  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||||| || || || ||||||  |||||| |||||| | ||| ||||||||||||    
T  27529838 tgatatagttcatgttttaaaaaaaaacactgtgagtaagattgatatctaggaacaatttgttaaatttagcttttaacatgacattgctctttttg 27529741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 380
Target Start/End: Complemental strand, 27603038 - 27602896
Alignment:
Q  238 ttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaa 337  Q
    ||||||||||||||| || |||||||||||| || |||||   |  || ||||||  ||| |||||   ||| ||||||||| | ||||||||||||||     
T  27603038 ttaaaagggaactaggaacattgaaatgatacatttgaattgtccctcaatggaaaacgtaatagagtggaatggaaaggccatgaagaagatgacaaat 27602939  T
Q  338 ctcaaaacagttatcttcgaaaatggccatttttctggaggtc 380  Q
    ||||||||| ||||| | |||||||| || |||||| ||||||    
T  27602938 ctcaaaacacttatcattgaaaatggtcagttttctagaggtc 27602896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 26951591 - 26951628
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatat 271  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26951591 tttgttaaaagggaactagtaaaattgaaatgatatat 26951628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 26979230 - 26979267
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatat 271  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26979230 tttgttaaaagggaactagtaaaattgaaatgatatat 26979267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 373
Target Start/End: Original strand, 26825668 - 26825800
Alignment:
Q  241 aaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactc 340  Q
    |||||||||||||||| | |||||| ||||||||||| |||  |||| | || | || |||||   ||| |||||||| |||| |||||||||||| |||    
T  26825668 aaagggaactagtaaagtcgaaatgctatatatgaatttcccctccaagaaaactgtaatagattggaatggaaaggctttcatgaagatgacaaatctc 26825767  T
Q  341 aaaacagttatcttcgaaaatggccatttttct 373  Q
    |||||| ||||  |  |||| ||||||||||||    
T  26825768 aaaacacttattattaaaaagggccatttttct 26825800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 26637410 - 26637453
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaat 277  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  26637410 tttgttaaaagggaactagtaaaattcaaatgatatatctgaat 26637453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 26743376 - 26743419
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaat 277  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  26743376 tttgttaaaagggaactagtaaaattcaaatgatatatctgaat 26743419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 26850568 - 26850642
Alignment:
Q  299 atagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttct 373  Q
    ||||||| ||| | |||||||||||||||||||||||| ||||||||| ||||| | ||| ||| | ||||||||    
T  26850568 atagacatgaatgaaaaggccttcaagaagatgacaaatctcaaaacacttatcgttgaagatgacaatttttct 26850642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 25491870 - 25491785
Alignment:
Q  8 cctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatga 93  Q
    ||||||||| | |||||||| || || |  |||||||| ||||  ||||||||||||||||| || |||||||||||||| |||||    
T  25491870 cctggagaacgtagtaggttgtggtgtcccgatgatatggttcaagttttaagagaaaacacggtaagtaagattgatatctatga 25491785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26885694 - 26885751
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta 58  Q
    |||||||||||||||| | ||||||||||| || || ||||||||||||| |||||||    
T  26885694 taaagagcctggagaacgtagtaggttatggtgtcacgatgatatagttcatgtttta 26885751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 27216300 - 27216342
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaa 276  Q
    ||||||||||||||||| | |||||||||||||||||| ||||    
T  27216300 tttgttaaaagggaacttggaaaattgaaatgatatatttgaa 27216342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 26979299 - 26979352
Alignment:
Q  299 atagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatc 352  Q
    ||||||| ||| | |||||| ||||||||||||||||| ||||||||| |||||    
T  26979299 atagacatgaatgaaaaggcattcaagaagatgacaaatctcaaaacacttatc 26979352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 266919 - 266553
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    |||||||||||||||| ||||||||||||| || || ||||||||||||| ||||||||   |||||||||||||||||||||||||  ||||||| |||    
T  266919 taaagagcctggagaacgaagtaggttatggtgtcaagatgatatagttcatgttttaaataaaaacactgtgagtaagattgatatcaatgatcaattt 266820  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatc 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||| |||| ||       | || ||||| | | | | || |||    
T  266819 gttatttagttttaatacgactttgctctttttggacaaaatatgaccatctcatactagtatttatt-------atttacatgtaagtttatctatatc 266727  T
Q  201 ttatttttattgtggttgattcatg-nnnnnnnctttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtga 299  Q
    ||||||||||||| |||||||||||         ||||||||||||||||||||||| |||||||||||||||||||| |||| || |||||| | || |    
T  266726 ttatttttattgttgttgattcatgtttttttgttttgttaaaagggaactagtaaagttgaaatgatatatatgaatttccactcgatggaacctgtaa 266627  T
Q  300 tagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttct 373  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||| || || | |||||||| |||||||||    
T  266626 tagaccagaaaggaaaggccttcaagaagatgacaaatctcaaaacacttgtcattgaaaatgggcatttttct 266553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 28131837 - 28131725
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgac 333  Q
    ||||||||||||||||| | |||||||||||||||| | | |||   || || |||||| |||| ||||||  |||  ||| |||||||||||||||| |    
T  28131837 tttgttaaaagggaactggaaaaattgaaatgatatgtcttaattgtcactcaatggaacccgtaatagactggaatcgaatggccttcaagaagatgtc 28131738  T
Q  334 aaaactcaaaaca 346  Q
    ||| || ||||||    
T  28131737 aaatcttaaaaca 28131725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 28126018 - 28125981
Alignment:
Q  234 tttgttaaaagggaactagtaaaattgaaatgatatat 271  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  28126018 tttgttaaaagggaactggtaacattgaaatgatatat 28125981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 2109 - 1957
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2109 taaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatctatgatcatttt 2010  T
Q  101 gttatttagttttaatacgactttgctctttttg-gactaaatattatcatct 152  Q
    |||||||||||||||||| |||||||||||||||  ||||||||| |||||||    
T  2009 gttatttagttttaatacaactttgctctttttgtaactaaatatgatcatct 1957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 393 - 563
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||| |||||||||||||||||||| || || ||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||| |||    
T  393 taaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaattt 492  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 171  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  493 gttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttc 563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 240 - 385
Target Start/End: Original strand, 616 - 761
Alignment:
Q  240 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 339  Q
    ||||||||||||| |||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  616 aaaagggaactagaaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagact 715  T
Q  340 caaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
     |||||  ||||| | ||||||| ||||||||||  ||||||||||    
T  716 gaaaacgcttatcattgaaaatgaccatttttctaaaggtctcaag 761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9111 - 9280
Alignment:
Q  1 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcatttt 100  Q
    ||||||||| |||||||||||||||||||| || || ||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||| |||    
T  9111 taaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaattt 9210  T
Q  101 gttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttctttt 170  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||| ||| |||| ||||    
T  9211 gttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatattagtatttttttt 9280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 240 - 385
Target Start/End: Original strand, 9335 - 9480
Alignment:
Q  240 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 339  Q
    ||||||||||||| |||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  9335 aaaagggaactagaaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagact 9434  T
Q  340 caaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
     |||||  ||||| | ||||||| ||||||||||  ||||||||||    
T  9435 gaaaacgcttatcattgaaaatgtccatttttctaaaggtctcaag 9480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 3272 - 3103
Alignment:
Q  2 aaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttg 101  Q
    ||||||||||||||||||||||| ||||| ||  | ||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||| ||||    
T  3272 aaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttg 3173  T
Q  102 ttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 171  Q
    |||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  3172 ttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttc 3103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 12235 - 12066
Alignment:
Q  2 aaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttg 101  Q
    ||||||||||||||||||||||| ||||| ||  | ||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||| ||||    
T  12235 aaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttg 12136  T
Q  102 ttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc 171  Q
    |||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |||||    
T  12135 ttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttc 12066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 240 - 385
Target Start/End: Complemental strand, 12014 - 11869
Alignment:
Q  240 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 339  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  12014 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagact 11915  T
Q  340 caaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
     |||||  ||||| | ||||||||||||||||||  ||||||||||    
T  11914 gaaaacgcttatcattgaaaatggccatttttctaaaggtctcaag 11869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 240 - 385
Target Start/End: Complemental strand, 3051 - 2906
Alignment:
Q  240 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 339  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  3051 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagact 2952  T
Q  340 caaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
     |||||  ||||| | ||||||| ||||||||||  ||||||||||    
T  2951 gaaaacgcttatcattgaaaatgtccatttttctaaaggtctcaag 2906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 242 - 385
Target Start/End: Complemental strand, 17991540 - 17991397
Alignment:
Q  242 aagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactca 341  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||| ||||||| | || |  ||| |||||||||||||||||||||| ||||||||    
T  17991540 aagggaactagtaaaattgaaatgatatatacgaatttcgattccatgaaatccgtaacagtctggaatggaaaggccttcaagaagatgaaaaaactca 17991441  T
Q  342 aaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    ||||| ||||| | ||||||| ||||||||||| ||||| ||||    
T  17991440 aaacacttatcattgaaaatgaccatttttctgaaggtcccaag 17991397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 61 - 345
Target Start/End: Original strand, 61238 - 61528
Alignment:
Q  61 agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttggac-taaatattatcatctgatact 158  Q
    |||||||||||||||||||||||||||  | || || |||||||||||| |||||| | ||||||||||||||||||  |  |||  | |||||||||||    
T  61238 agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttggatatgtatacaagcatctgatact 61337  T
Q  159 agcatttcttttcactcaattgcatgttaatatttgtacatcttatttttattgtggttgattcatgnnnnnnncttt------gttaaaagggaactag 252  Q
    |  | ||||||||| | |||| ||  | ||| | | ||  |||||||| |||||||||||||||||         |||      ||||||||||||| ||    
T  61338 actaattcttttcagttaattacacataaatttctcta--tcttatttgtattgtggttgattcatcttttttttttttttttcgttaaaagggaaccag 61435  T
Q  253 taaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaac 345  Q
    ||||||||||||||||||||||||| | || || ||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||    
T  61436 taaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaagatgacacacctcaaaac 61528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 18075613 - 18075720
Alignment:
Q  238 ttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaa 337  Q
    |||||||||||| ||||||||||||||||||||||||||| | || || ||||||||||| ||||||||||| |||||||||||||||||||||||| |     
T  18075613 ttaaaagggaaccagtaaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaagatgacacac 18075712  T
Q  338 ctcaaaac 345  Q
    ||||||||    
T  18075713 ctcaaaac 18075720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 18722472 - 18722357
Alignment:
Q  236 tgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaa 335  Q
    |||||||||||||| ||||||||||| ||||||||| |||||   |  || | |||  |||| ||||||  ||| |||||||||||||||||||||||||    
T  18722472 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctcgctcaacggatcccgtaatagactggaatggaaaggccttcaagaagatgacaa 18722373  T
Q  336 aactcaaaacagttat 351  Q
    | ||||||||| ||||    
T  18722372 atctcaaaacacttat 18722357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 18075430 - 18075506
Alignment:
Q  61 agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga 136  Q
    |||||||||||||||||||||||||||  | || || |||||||||||| |||||| | ||||||||||||||||||    
T  18075430 agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga 18075506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 18653876 - 18653761
Alignment:
Q  236 tgttaaaagggaactagtaaaattgaaatgatatatatgaat-ctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 334  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| |||| | | |||||    || ||||||  ||| ||||||||||||||||||||||||    
T  18653876 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctccct-caatggatctggtaatagactggaatggaaaggccttcaagaagatgaca 18653778  T
Q  335 aaactcaaaacagttat 351  Q
    || ||||||||| ||||    
T  18653777 aatctcaaaacacttat 18653761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 18697800 - 18697685
Alignment:
Q  236 tgttaaaagggaactagtaaaattgaaatgatatatatgaat-ctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 334  Q
    |||||||||||||| ||||||||||| ||||||||| ||| | |||| | | | |||  |||| ||||||  ||| ||||||||||||||||||||||||    
T  18697800 tgttaaaagggaacaagtaaaattgagatgatatatctgagttctccct-caacggatcccgtaatagactggaatggaaaggccttcaagaagatgaca 18697702  T
Q  335 aaactcaaaacagttat 351  Q
    || ||||||||| ||||    
T  18697701 aatctcaaaacacttat 18697685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 385
Target Start/End: Complemental strand, 18677958 - 18677809
Alignment:
Q  236 tgttaaaagggaactagtaaaattgaaatgatatatatgaat-ctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 334  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| |||| | | |||||    || ||||||  ||| |||||| |||||||||||||||||    
T  18677958 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctccct-caatggatctggtaatagactggaatggaaagaccttcaagaagatgaca 18677860  T
Q  335 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaag 385  Q
    || ||||||||| ||||  | ||||||| |  |||||||  ||||||||||    
T  18677859 aatctcaaaacacttattattgaaaatgtctctttttctaaaggtctcaag 18677809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 18688012 - 18687897
Alignment:
Q  236 tgttaaaagggaactagtaaaattgaaatgatatatatgaa-tctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 334  Q
    |||||||||||||| ||||||||||| ||||||||| |||| |||||  || |||||    || ||||||  ||| |||||||| |||||||||||||||    
T  18688012 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctcc-ctcaatggatctggtaatagactggaatggaaaggctttcaagaagatgaca 18687914  T
Q  335 aaactcaaaacagttat 351  Q
    || ||||||||| ||||    
T  18687913 aatctcaaaacacttat 18687897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 18729894 - 18729779
Alignment:
Q  236 tgttaaaagggaactagtaaaattgaaatgatatatatgaa-tctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 334  Q
    |||||||||||||| ||||||||||| ||||||||| |||| |||||  || |||||    || ||||||  ||| |||||||| |||||||||||||||    
T  18729894 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctcc-ctcaatggatctggtaatagactggaatggaaaggctttcaagaagatgaca 18729796  T
Q  335 aaactcaaaacagttat 351  Q
    || ||||||||| ||||    
T  18729795 aatctcaaaacacttat 18729779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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