View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_29 (Length: 402)
Name: NF14713_low_29
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 36715405 - 36715004
Alignment:
| Q |
1 |
aggtattttaacaaacatatattgtgcacttttaacctgtccatagtttatgataccagcagccgggcttatctcaatgtttccatagcgaatgagggat |
100 |
Q |
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| T |
36715405 |
aggtattttaacaaacatatattgtgcacttttaacctgtccatagtttatgataccagcagccgggcttatctcaatgtttccgtagcgaatgagggat |
36715306 |
T |
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| Q |
101 |
ccttgagaaaacttttctccttttgtgcatttcatgacatgcatgtaatctgtttgagtcagactaaaactaagtccttcccaattgatgtcagcataat |
200 |
Q |
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| T |
36715305 |
ccttgagaaaacttttctccttttgtgcatttcatgacatgcatgtaatctgtttgagtcagactaaaactaagtccttcccaattgatgtcagcataat |
36715206 |
T |
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| Q |
201 |
tttcacccatatcactgcaatttttcatacaggaacggttgatcaaataatagatagtattactatttactagtaaaagcaaaagtgcaagtttattgta |
300 |
Q |
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||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
36715205 |
tttcacccatatcactgcaatttttcaaacagaaatggttgatcaaataatagatagtattactatttactattaaaagcaaaagtacaagtttattgta |
36715106 |
T |
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| Q |
301 |
cctttcagaaccatcttcagtgtcccttaaaatagaaggaggagccatggttgagagaaatgggaggcttctgcatttaaaacacatgtcaagcatatgg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
36715105 |
cctttcagaaccatcttcagtgtcccttaaaatagaaggaggagccatggttgagagaaatgggatccttctgcattgaaaacccatgtcaagcatatgg |
36715006 |
T |
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| Q |
401 |
ct |
402 |
Q |
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|| |
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| T |
36715005 |
ct |
36715004 |
T |
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