View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_3 (Length: 734)
Name: NF14713_low_3
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 681; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 20 - 724
Target Start/End: Complemental strand, 34216654 - 34215950
Alignment:
| Q |
20 |
ttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttgga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216654 |
ttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttgga |
34216555 |
T |
|
| Q |
120 |
attggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgct |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216554 |
attggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgct |
34216455 |
T |
|
| Q |
220 |
gctgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtttctgcttctgttacggagatgagtccctcgcttgccc |
319 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34216454 |
gccgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtttctgcttctgttaaggagatgagtccctcgcttgccc |
34216355 |
T |
|
| Q |
320 |
aactcagtaaatcacaaacggatgtttccaccaattcgttcaaccttgccttgcaatatgttatagatgaaattccaaagggaaggttgcctcagctcac |
419 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216354 |
aactcagtaaatcacaaacggatgtttccaccaattcgttcaaccttgccttgcaatatgttatagatgaaattccaaagggaaggttgcctcagctcac |
34216255 |
T |
|
| Q |
420 |
tagccccgtgttggatttggttactgcagtagcatacgatgacgtgcattcaaatgtagtggagcaaacactttcaggattctcaggacacgagcgttct |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216254 |
tagccccgtgttggatttggttactgcagtagcatacgatgacgtgcattcaaatgtagtggagcaaacactttcaggattctcaggacacgagcgttct |
34216155 |
T |
|
| Q |
520 |
agagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctgttaggtagatg |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34216154 |
agagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgacgtgcatgagaatgccgagttagctctctccgcttctgttaggtagatg |
34216055 |
T |
|
| Q |
620 |
agtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgtttcggcctttg |
719 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
34216054 |
agtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaaatttctgttgtttcggccattg |
34215955 |
T |
|
| Q |
720 |
cttct |
724 |
Q |
| |
|
||||| |
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|
| T |
34215954 |
cttct |
34215950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 511 - 721
Target Start/End: Original strand, 11212583 - 11212788
Alignment:
| Q |
511 |
gagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctgtt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| || ||||||||||| ||||||||||||||| |||| |
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| T |
11212583 |
gagcgttctagagacttctgtagctgctgttccgcttatctttttagtagagtgcgttgacgcacatgagaacgc-----tagctctctccgcttatgtt |
11212677 |
T |
|
| Q |
611 |
aggtagatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgttt |
710 |
Q |
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||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
11212678 |
agggagatgagtccctcgccaacccagatcaatgaatctcaatctgaggtgcatacaggttcgccccacctgcactcacaagccaaagtttctgctgttt |
11212777 |
T |
|
| Q |
711 |
cggcctttgct |
721 |
Q |
| |
|
||||| ||||| |
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| T |
11212778 |
cggccattgct |
11212788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 615 - 721
Target Start/End: Original strand, 18485088 - 18485194
Alignment:
| Q |
615 |
agatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgtttcggc |
714 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| |||||| ||||||||||| |||| |||| ||||||||||||||||||| |||||| |||| |||| |
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| T |
18485088 |
agatgagcccctcgcttgcccagctcaatgaatcacaatctgaggtgcatacatgttcaccccacctgcactcacaagccaaaatttctgctgttacggc |
18485187 |
T |
|
| Q |
715 |
ctttgct |
721 |
Q |
| |
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| ||||| |
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| T |
18485188 |
cattgct |
18485194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 19552189 - 19552380
Alignment:
| Q |
30 |
ttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttcc |
129 |
Q |
| |
|
|||||||||||| |||||||| | ||||| ||||||||||||||||| || || |||||||| ||||| | |||||||| ||| || ||| || |
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| T |
19552189 |
ttctgccaactcgttcagctttgcgttgcaaaatgttacagatgaaatccctcaaggaaggttacctcaggcttctagtcccatgttagagttg---tct |
19552285 |
T |
|
| Q |
130 |
gaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgctgctgt |
224 |
Q |
| |
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|| ||||| ||| |||||||||||||||| ||||| || ||| | |||||| ||||||| |||| ||||||| || ||||| ||||||||| |
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| T |
19552286 |
gaagtagcgcacaatgacgtgcattcacatggagtggaacaaacacaacaggactctcggaccgtacaggttcttgagatttctgccgctgctgt |
19552380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 27457937 - 27457810
Alignment:
| Q |
28 |
gtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggttt |
127 |
Q |
| |
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||||| |||||||| |||||||| ||||||| ||||||| |||||||| || || |||||||| ||||| ||| |||||| | |||||| || | |
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| T |
27457937 |
gtttccgccaactcgttcagctttgcattgcataatgttatggatgaaatccctcaaggaaggttacctcaggccgttagtcctgtgttggagctg---t |
27457841 |
T |
|
| Q |
128 |
ccgaggtagcacacgatgacgtgcattcaca |
158 |
Q |
| |
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|||| ||||| |||||||||||||||||||| |
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|
| T |
27457840 |
ccgaagtagcgcacgatgacgtgcattcaca |
27457810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 21565079 - 21565119
Alignment:
| Q |
114 |
gttggaattggtttccgaggtagcacacgatgacgtgcatt |
154 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
21565079 |
gttggaattggtttccgaggtagcccacgatgacgtgcatt |
21565119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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